Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 5.5e-37 157.1 80 100.0
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 7.4e-18 93.6 81 64.2
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 2.2e-17 92.0 82 59.8
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 3.5e-15 84.7 77 58.4
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 4.5e-15 84.3 77 59.7
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 5.9e-15 84.0 57 68.4
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 7.7e-15 83.6 75 60.0
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.3e-14 82.8 76 59.2
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 1.3e-14 82.8 75 58.7
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 1.3e-14 82.8 75 58.7
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 1.3e-14 82.8 75 58.7
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 2.2e-14 82.0 61 65.6
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 2.2e-14 82.0 72 59.7
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 2.9e-14 81.6 75 57.3
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 2.9e-14 81.6 58 67.2
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.8e-14 81.3 61 63.9
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 5.0e-14 80.9 78 57.7
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 6.5e-14 80.5 81 58.0
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 6.5e-14 80.5 66 57.6
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 6.5e-14 80.5 77 57.1
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 6.5e-14 80.5 53 73.6
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 6.5e-14 80.5 65 60.0
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 8.5e-14 80.1 77 55.8
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 1.1e-13 79.7 75 56.0
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 1.1e-13 79.7 78 57.7
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 1.1e-13 79.7 75 58.7
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 1.5e-13 79.3 77 53.2
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 1.5e-13 79.3 57 66.7
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 1.9e-13 79.0 77 51.9
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 1.9e-13 79.0 61 63.9
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 2.5e-13 78.6 75 56.0
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.5e-13 78.6 77 54.5
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 2.5e-13 78.6 77 54.5
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 3.2e-13 78.2 54 68.5
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.2e-13 78.2 77 55.8
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 3.2e-13 78.2 56 66.1
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 4.2e-13 77.8 57 66.7
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 4.2e-13 77.8 68 58.8
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 5.5e-13 77.4 57 63.2
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 5.5e-13 77.4 77 54.5
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 7.2e-13 77.0 81 53.1
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 7.2e-13 77.0 57 63.2
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 7.2e-13 77.0 77 53.2
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 7.2e-13 77.0 58 63.8
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 9.4e-13 76.6 51 72.5
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 1.2e-12 76.3 75 58.7
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 1.2e-12 76.3 70 55.7
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 1.2e-12 76.3 80 56.2
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 1.2e-12 76.3 57 63.2
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.6e-12 75.9 57 63.2
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.6e-12 75.9 54 66.7
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 2.1e-12 75.5 75 57.3
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 2.1e-12 75.5 55 67.3
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 2.1e-12 75.5 80 52.5
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 2.1e-12 75.5 59 61.0
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 2.1e-12 75.5 66 56.1
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 2.7e-12 75.1 79 54.4
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 2.7e-12 75.1 77 50.6
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 2.7e-12 75.1 58 60.3
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 3.6e-12 74.7 57 61.4
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 3.6e-12 74.7 64 59.4
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 3.6e-12 74.7 58 65.5
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 4.7e-12 74.3 65 55.4
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 4.7e-12 74.3 52 69.2
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 4.7e-12 74.3 58 62.1
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 6.1e-12 73.9 80 50.0
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 6.1e-12 73.9 59 64.4
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 8.0e-12 73.6 75 53.3
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 8.0e-12 73.6 53 64.2
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 8.0e-12 73.6 64 57.8
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 8.0e-12 73.6 57 61.4
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 1.4e-11 72.8 53 62.3
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 1.8e-11 72.4 62 54.8
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 1.8e-11 72.4 54 64.8
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 2.3e-11 72.0 75 50.7
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 2.3e-11 72.0 53 66.0
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 2.3e-11 72.0 82 50.0
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 3.0e-11 71.6 52 67.3
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 4.0e-11 71.2 54 66.7
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 5.2e-11 70.9 65 55.4
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 2.0e-10 68.9 54 63.0
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 7.5e-10 67.0 57 56.1
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 2.2e-09 65.5 53 54.7
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.1e-08 63.2 40 70.0
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 1.1e-08 63.2 82 46.3
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 2.4e-08 62.0 44 63.6
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 3.1e-08 61.6 65 46.2
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 3.1e-08 61.6 48 60.4
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 2.7e-07 58.5 51 58.8
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 2.2e-06 55.5 40 67.5
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 8.5e-06 53.5 36 72.2


User provided reference genes

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