Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 0.0e+00 1087.4 568 100.0
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 4.5e-85 319.7 588 37.9
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.5e-83 314.7 576 36.1
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.2e-82 311.6 579 35.8
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.2e-82 311.6 555 36.8
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.1e-82 310.8 578 37.4
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.6e-82 310.1 576 35.8
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 4.7e-82 309.7 580 35.5
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 4.7e-82 309.7 579 35.4
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 4.7e-82 309.7 581 35.8
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 8.0e-82 308.9 532 38.3
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.0e-81 308.5 579 35.6
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.0e-81 308.5 579 35.6
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-81 308.1 579 35.6
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-81 307.8 573 36.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 2.3e-81 307.4 585 36.2
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.0e-81 307.0 584 37.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 4.0e-81 306.6 579 36.3
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 5.2e-81 306.2 581 36.5
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 5.2e-81 306.2 576 38.2
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 6.8e-81 305.8 561 36.9
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 6.8e-81 305.8 579 35.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 8.8e-81 305.4 584 36.5
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.5e-80 304.7 560 36.8
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 2.0e-80 304.3 577 36.9
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.4e-80 303.5 580 35.5
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 3.4e-80 303.5 576 35.1
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 4.4e-80 303.1 578 35.8
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 5.7e-80 302.8 590 34.9
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 5.7e-80 302.8 579 35.6
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 5.7e-80 302.8 576 37.3
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 9.8e-80 302.0 579 35.6
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.3e-79 301.6 579 35.4
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.3e-79 301.6 579 37.1
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 2.2e-79 300.8 593 34.9
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.2e-79 300.8 555 36.2
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.7e-79 300.1 583 36.0
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.7e-79 300.1 587 36.3
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 4.8e-79 299.7 574 35.5
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 8.3e-79 298.9 574 33.8
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 8.3e-79 298.9 580 36.9
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.1e-78 298.5 554 35.6
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.1e-78 298.5 580 36.4
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.4e-78 298.1 585 36.1
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.8e-78 297.7 592 34.6
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.8e-78 297.7 557 35.9
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.1e-78 297.0 582 36.1
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.1e-78 297.0 574 35.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 3.1e-78 297.0 578 36.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 4.1e-78 296.6 583 35.8
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 4.1e-78 296.6 533 37.7
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.1e-78 295.4 583 35.8
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 9.1e-78 295.4 589 35.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.0e-77 294.3 579 35.8
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.5e-77 293.5 560 36.6
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 3.5e-77 293.5 579 36.1
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 4.5e-77 293.1 559 36.7
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 7.7e-77 292.4 576 35.1
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 7.7e-77 292.4 583 34.8
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.0e-76 292.0 577 36.7
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.0e-76 292.0 559 35.8
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.3e-76 291.6 579 34.7
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.7e-76 291.2 520 36.7
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.7e-76 291.2 594 36.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.3e-76 290.8 580 35.2
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 2.9e-76 290.4 578 34.6
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 2.9e-76 290.4 590 34.4
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 5.0e-76 289.7 580 34.5
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 6.6e-76 289.3 575 37.2
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 8.6e-76 288.9 597 36.7
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 8.6e-76 288.9 580 34.5
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 8.6e-76 288.9 580 35.3
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.1e-75 288.5 597 34.8
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.1e-75 288.5 596 34.6
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 3.3e-75 287.0 586 35.2
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 4.2e-75 286.6 556 36.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 5.5e-75 286.2 580 34.3
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 7.2e-75 285.8 419 41.5
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.2e-75 285.8 585 36.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.6e-74 283.5 585 36.8
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 8.0e-74 282.3 562 34.7
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.3e-73 280.8 582 36.6
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.5e-72 278.1 408 41.2
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 2.0e-72 277.7 392 41.1
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 4.4e-72 276.6 578 35.3
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.7e-72 276.2 582 36.6
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 5.7e-72 276.2 317 43.8
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 7.5e-72 275.8 579 34.2
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.8e-71 273.9 619 33.1
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 3.7e-71 273.5 584 35.3
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 8.3e-71 272.3 580 33.8
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.2e-70 270.4 369 42.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.0e-69 267.7 520 35.8
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.7e-69 267.3 569 33.9
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-69 267.3 588 33.8
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 6.6e-68 262.7 429 38.2
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 8.6e-68 262.3 525 34.7
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 7.3e-67 259.2 477 35.2
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 2.1e-66 257.7 519 32.9
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 3.6e-66 256.9 281 48.8
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 4.7e-66 256.5 481 35.8
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.0e-66 255.8 352 42.3
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 4.0e-65 253.4 594 33.0
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 5.2e-65 253.1 550 35.3
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 5.8e-64 249.6 574 32.6
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.0e-61 241.1 376 40.2
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.0e-60 238.8 652 30.8
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.9e-59 234.6 489 33.3
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.2e-58 229.6 570 32.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.8e-57 228.0 347 38.0
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 6.8e-57 226.1 243 48.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 6.8e-57 226.1 243 48.6
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.4e-56 223.4 493 33.7
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.6e-53 214.9 247 47.8
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.7e-53 214.2 272 42.3
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.7e-53 214.2 492 34.1
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 4.3e-51 206.8 222 49.5
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 7.3e-51 206.1 235 47.2
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 4.0e-49 200.3 548 31.0
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.6e-48 197.6 282 41.8
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-46 192.2 193 53.4
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 5.1e-44 183.3 227 45.4
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-43 180.3 579 28.5
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 6.4e-39 166.4 502 28.1
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 8.4e-39 166.0 160 55.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 2.4e-33 147.9 396 28.5
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 2.0e-32 144.8 144 52.1
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.3e-28 132.1 144 54.2
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 3.0e-28 131.0 419 29.8
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.9e-28 130.6 144 53.5
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-27 128.3 127 55.1
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 9.6e-27 125.9 241 38.6
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.6e-26 125.2 438 28.3
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.4e-25 121.3 140 48.6
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 5.3e-25 120.2 254 35.0
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.4e-22 112.1 255 31.8
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.4e-22 112.1 176 42.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.5e-19 101.3 253 33.2
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 3.3e-19 100.9 218 31.2
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.3e-17 93.6 398 24.6
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.3e-11 73.9 320 23.4
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-09 68.6 87 47.1
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 4.1e-09 67.4 131 35.1
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 5.8e-08 63.5 196 29.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-07 62.0 92 41.3


User provided reference genes

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