Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 3.2e-87 325.1 167 100.0
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.7e-48 196.4 143 67.1
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.2e-48 196.1 144 63.9
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.2e-46 190.3 148 62.8
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.1e-44 183.7 140 65.7
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 3.3e-44 182.2 139 64.7
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.2e-43 179.5 145 62.8
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 6.3e-43 177.9 149 61.1
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.1e-42 177.2 149 61.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.1e-42 177.2 163 55.2
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-42 177.2 149 61.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.1e-42 177.2 144 63.2
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.1e-42 177.2 168 57.1
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.1e-42 177.2 161 57.1
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.4e-42 176.8 168 53.6
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.8e-42 176.4 149 59.7
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.8e-42 176.4 149 59.7
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.8e-42 176.4 149 60.4
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 2.4e-42 176.0 149 60.4
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.4e-42 176.0 151 58.9
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 2.4e-42 176.0 149 59.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 3.1e-42 175.6 149 60.4
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 3.1e-42 175.6 149 60.4
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 4.1e-42 175.3 164 57.3
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 4.1e-42 175.3 154 56.5
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 4.1e-42 175.3 149 60.4
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 4.1e-42 175.3 148 60.1
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 5.3e-42 174.9 152 57.9
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 5.3e-42 174.9 149 59.7
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 5.3e-42 174.9 158 55.7
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 59.7
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 59.7
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 59.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 6.9e-42 174.5 144 61.8
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 59.1
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 60.4
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 60.4
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 6.9e-42 174.5 149 59.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 6.9e-42 174.5 148 59.5
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 6.9e-42 174.5 151 57.0
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 9.0e-42 174.1 149 59.1
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 9.0e-42 174.1 149 59.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.2e-41 173.7 149 60.4
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.2e-41 173.7 165 55.2
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-41 173.7 149 59.7
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.2e-41 173.7 149 59.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.2e-41 173.7 149 59.7
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.2e-41 173.7 148 59.5
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.5e-41 173.3 149 57.0
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.5e-41 173.3 148 60.1
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.5e-41 173.3 142 62.0
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.0e-41 172.9 148 59.5
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.0e-41 172.9 149 59.1
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.6e-41 172.6 149 59.7
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 2.6e-41 172.6 161 55.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.6e-41 172.6 151 56.3
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 3.4e-41 172.2 163 56.4
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 4.5e-41 171.8 148 59.5
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 4.5e-41 171.8 148 58.8
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.5e-41 171.8 149 60.4
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 4.5e-41 171.8 149 59.7
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 5.9e-41 171.4 149 58.4
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 5.9e-41 171.4 149 57.7
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 5.9e-41 171.4 143 59.4
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 7.6e-41 171.0 146 58.2
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 7.6e-41 171.0 149 57.7
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 7.6e-41 171.0 148 58.8
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.0e-40 170.6 146 58.9
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.3e-40 170.2 146 59.6
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.3e-40 170.2 145 59.3
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.3e-40 170.2 148 59.5
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.7e-40 169.9 151 57.6
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 2.2e-40 169.5 149 59.7
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 2.2e-40 169.5 148 59.5
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.2e-40 169.5 149 55.7
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.2e-40 169.5 165 54.5
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.2e-40 169.5 162 53.7
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 2.9e-40 169.1 149 56.4
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 2.9e-40 169.1 149 56.4
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.9e-40 169.1 156 57.1
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.9e-40 169.1 149 57.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.9e-40 169.1 149 59.1
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 2.9e-40 169.1 146 58.2
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 5.0e-40 168.3 149 57.0
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 5.0e-40 168.3 148 56.1
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 5.0e-40 168.3 158 53.8
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 6.5e-40 167.9 149 53.7
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 6.5e-40 167.9 149 57.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.5e-40 167.9 156 55.1
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.1e-39 167.2 148 56.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.4e-39 166.8 148 56.8
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.9e-39 166.4 149 56.4
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.9e-39 166.4 143 58.7
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.9e-39 166.4 149 56.4
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.9e-39 166.4 149 56.4
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.9e-39 166.4 146 57.5
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 3.2e-39 165.6 148 54.7
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 4.2e-39 165.2 148 56.1
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 5.5e-39 164.9 150 56.0
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 5.5e-39 164.9 148 56.1
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 7.2e-39 164.5 146 54.8
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 7.2e-39 164.5 149 55.7
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 7.2e-39 164.5 154 54.5
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 9.3e-39 164.1 143 59.4
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 9.3e-39 164.1 142 61.3
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.2e-38 163.7 148 56.1
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 2.1e-38 162.9 149 55.7
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.7e-38 162.5 144 56.2
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 4.6e-38 161.8 154 53.9
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 5.1e-37 158.3 149 54.4
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 6.7e-37 157.9 130 60.0
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.1e-36 157.1 146 53.4
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.1e-34 150.6 134 52.2
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 5.3e-34 148.3 139 52.5
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.0e-33 146.4 141 53.2
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.4e-31 140.2 149 52.3
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.4e-28 127.9 122 56.6
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.7e-27 126.7 123 56.9
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 8.2e-27 124.4 145 49.0
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.3e-24 117.1 88 61.4
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 2.9e-24 115.9 88 62.5
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.1e-23 114.0 182 40.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 4.2e-23 112.1 155 42.6
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.2e-17 94.0 146 41.1
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 7.7e-17 91.3 84 57.1
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.5e-15 87.0 93 51.6
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 5.5e-15 85.1 146 38.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 4.7e-14 82.0 100 44.0
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 6.1e-14 81.6 149 39.6
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 6.1e-14 81.6 149 39.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.4e-13 80.5 53 64.2
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.2e-12 77.4 47 70.2
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 2.0e-09 66.6 60 58.3
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 5.9e-09 65.1 146 32.9
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 5.9e-09 65.1 146 32.9
MCO08G114 Micromonas commoda HOM05D000101 ORTHO05D007021 1.5e-07 60.5 121 31.4
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.1e-06 55.1 64 42.2


User provided reference genes

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