Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 5.9e-38 160.2 73 100.0
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.6e-22 109.0 73 64.4
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.0e-22 108.6 73 64.4
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.7e-22 108.2 73 64.4
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 4.0e-18 94.4 71 60.6
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 4.0e-18 94.4 67 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 5.2e-18 94.0 73 58.9
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.9e-16 87.4 71 54.9
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 2.4e-15 85.1 73 53.4
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 3.2e-15 84.7 73 50.7
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 4.1e-15 84.3 73 52.1
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 5.4e-15 84.0 71 52.1
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 5.4e-15 84.0 73 49.3
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 7.0e-15 83.6 73 50.7
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 9.2e-15 83.2 73 50.7
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 9.2e-15 83.2 73 50.7
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 1.2e-14 82.8 73 50.7
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 1.2e-14 82.8 73 47.9
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.2e-14 82.8 73 50.7
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.6e-14 82.4 71 50.7
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 1.6e-14 82.4 73 52.1
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.6e-14 82.4 71 50.7
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.6e-14 82.4 71 50.7
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 2.0e-14 82.0 71 50.7
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-14 82.0 71 50.7
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-14 82.0 71 50.7
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 2.0e-14 82.0 71 50.7
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 2.0e-14 82.0 71 50.7
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 2.0e-14 82.0 71 50.7
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 2.0e-14 82.0 73 49.3
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 2.0e-14 82.0 73 49.3
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 2.7e-14 81.6 73 49.3
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 2.7e-14 81.6 73 49.3
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 2.7e-14 81.6 71 50.7
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 2.7e-14 81.6 72 48.6
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 2.7e-14 81.6 73 50.7
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 3.5e-14 81.3 71 50.7
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 3.5e-14 81.3 71 49.3
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 4.6e-14 80.9 73 47.9
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.6e-14 80.9 71 49.3
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 4.6e-14 80.9 71 46.5
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 4.6e-14 80.9 73 49.3
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 47.9
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 50.7
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 50.7
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 50.7
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 50.7
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 5.9e-14 80.5 73 49.3
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 5.9e-14 80.5 73 49.3
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 5.9e-14 80.5 73 49.3
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 49.3
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 49.3
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.9e-14 80.5 71 49.3
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 5.9e-14 80.5 73 47.9
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 5.9e-14 80.5 73 47.9
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 5.9e-14 80.5 73 49.3
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 7.8e-14 80.1 71 50.7
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 7.8e-14 80.1 71 50.7
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 7.8e-14 80.1 73 49.3
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 7.8e-14 80.1 71 50.7
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 7.8e-14 80.1 70 48.6
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 7.8e-14 80.1 73 47.9
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 1.0e-13 79.7 71 47.9
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.0e-13 79.7 71 47.9
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.0e-13 79.7 73 49.3
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 1.0e-13 79.7 73 47.9
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.0e-13 79.7 73 47.9
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.3e-13 79.3 71 49.3
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.3e-13 79.3 71 49.3
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 1.3e-13 79.3 71 49.3
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 49.3
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 1.3e-13 79.3 73 47.9
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 1.7e-13 79.0 71 49.3
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 1.7e-13 79.0 73 46.6
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.7e-13 79.0 71 49.3
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.7e-13 79.0 73 46.6
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 1.7e-13 79.0 73 47.9
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.3e-13 78.6 73 46.6
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 2.3e-13 78.6 73 46.6
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.3e-13 78.6 71 49.3
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 2.9e-13 78.2 71 49.3
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 2.9e-13 78.2 70 47.1
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 2.9e-13 78.2 73 45.2
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 2.9e-13 78.2 73 46.6
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 2.9e-13 78.2 73 45.2
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 2.9e-13 78.2 73 46.6
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 3.9e-13 77.8 73 45.2
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 3.9e-13 77.8 73 45.2
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.9e-13 77.8 73 47.9
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 3.9e-13 77.8 73 50.7
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 5.0e-13 77.4 73 46.6
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 5.0e-13 77.4 73 45.2
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 6.6e-13 77.0 73 45.2
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 6.6e-13 77.0 71 47.9
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 6.6e-13 77.0 73 45.2
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 6.6e-13 77.0 71 46.5
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 8.6e-13 76.6 73 46.6
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 8.6e-13 76.6 73 45.2
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 8.6e-13 76.6 73 47.9
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 8.6e-13 76.6 73 47.9
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 8.6e-13 76.6 73 47.9
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 1.1e-12 76.3 73 43.8
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 1.1e-12 76.3 71 45.1
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 1.5e-12 75.9 73 43.8
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 1.9e-12 75.5 73 49.3
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 1.9e-12 75.5 73 46.6
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 1.9e-12 75.5 70 47.1
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.9e-12 75.5 73 46.6
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 1.9e-12 75.5 73 46.6
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.9e-12 75.5 73 46.6
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 3.3e-12 74.7 73 46.6
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 3.3e-12 74.7 70 44.3
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 3.3e-12 74.7 73 45.2
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 4.3e-12 74.3 73 43.8
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 4.3e-12 74.3 73 46.6
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 4.3e-12 74.3 70 50.0
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 4.3e-12 74.3 73 45.2
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 7.3e-12 73.6 73 43.8
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 7.3e-12 73.6 73 46.6
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 9.5e-12 73.2 73 43.8
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 9.5e-12 73.2 73 43.8
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 1.6e-11 72.4 73 45.2
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 3.6e-11 71.2 73 46.6
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 3.6e-11 71.2 73 42.5
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 4.7e-11 70.9 92 39.1
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 4.7e-11 70.9 73 45.2
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 6.1e-11 70.5 73 46.6
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 6.1e-11 70.5 73 46.6
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 1.0e-10 69.7 73 42.5
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.0e-10 69.7 73 42.5
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.0e-10 69.7 73 42.5
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.0e-10 69.7 73 42.5
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.0e-10 69.7 73 42.5
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 4.0e-10 67.8 71 47.9
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 8.9e-10 66.6 71 42.3
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 1.2e-09 66.2 58 50.0
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 1.5e-09 65.9 94 36.2
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 2.0e-09 65.5 103 33.0
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 3.4e-09 64.7 64 46.9
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 9.8e-09 63.2 58 46.6
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.3e-08 62.8 56 50.0
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 4.9e-08 60.8 59 42.4
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 6.4e-08 60.5 63 41.3
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 6.4e-08 60.5 56 46.4
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 6.4e-08 60.5 58 46.6
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.3e-08 60.1 56 46.4
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.4e-07 59.3 56 48.2
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.2e-07 58.2 56 46.4
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 4.1e-07 57.8 66 43.9
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 5.4e-07 57.4 54 46.3
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 9.2e-07 56.6 56 44.6
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 9.2e-07 56.6 53 47.2
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 3.5e-06 54.7 57 43.9
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 3.5e-06 54.7 63 39.7
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 7.8e-06 53.5 52 42.3


User provided reference genes

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