Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 3.3e-173 611.7 322 100.0
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 3.7e-116 422.2 322 73.0
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 1.3e-65 254.2 337 48.4
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 1.2e-63 247.7 335 46.6
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.7e-52 210.7 324 41.0
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 4.9e-52 209.1 319 41.7
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 6.4e-52 208.8 325 41.2
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 5.8e-45 185.7 316 40.2
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 4.9e-44 182.6 316 39.6
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.2e-42 177.9 273 42.5
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 1.0e-41 174.9 273 41.8
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 1.3e-41 174.5 323 37.8
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 3.9e-41 172.9 320 37.8
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 1.1e-40 171.4 273 38.8
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 1.5e-40 171.0 320 38.4
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 2.5e-40 170.2 273 38.8
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 5.6e-40 169.1 321 37.1
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 5.6e-40 169.1 320 36.6
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 5.6e-40 169.1 318 36.8
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 5.6e-40 169.1 274 40.5
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 7.3e-40 168.7 273 41.0
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.2e-39 167.9 318 37.7
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.2e-39 167.9 321 37.7
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.2e-39 167.9 318 36.8
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 1.6e-39 167.5 316 35.4
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 2.8e-39 166.8 318 36.5
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 2.8e-39 166.8 316 37.3
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.6e-39 166.4 275 40.0
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 4.7e-39 166.0 275 39.6
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 6.2e-39 165.6 318 38.1
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 6.2e-39 165.6 318 38.1
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 6.2e-39 165.6 271 39.9
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 6.2e-39 165.6 316 38.0
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 6.2e-39 165.6 274 39.8
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 6.2e-39 165.6 266 39.5
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 1.1e-38 164.9 316 37.3
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.1e-38 164.9 316 38.0
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 1.4e-38 164.5 272 40.8
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.4e-38 164.5 318 37.1
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 1.8e-38 164.1 266 40.2
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 1.8e-38 164.1 300 37.7
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 3.1e-38 163.3 273 40.3
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 3.1e-38 163.3 273 38.1
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.1e-38 163.3 246 41.5
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 3.1e-38 163.3 246 41.5
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 3.1e-38 163.3 275 38.2
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.0e-38 162.9 246 42.7
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 5.2e-38 162.5 321 35.8
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 6.9e-38 162.2 246 41.1
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 6.9e-38 162.2 273 36.6
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 6.9e-38 162.2 273 36.6
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 6.9e-38 162.2 317 36.3
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 8.9e-38 161.8 273 39.6
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 1.5e-37 161.0 267 38.6
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.5e-37 161.0 246 42.7
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.5e-37 161.0 274 39.1
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 2.0e-37 160.6 246 42.7
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 2.0e-37 160.6 267 38.6
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 2.6e-37 160.2 318 36.8
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 5.8e-37 159.1 327 36.1
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 5.8e-37 159.1 315 36.8
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 5.8e-37 159.1 272 36.8
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 7.6e-37 158.7 318 36.2
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 7.6e-37 158.7 315 35.6
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 7.6e-37 158.7 316 36.7
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 9.9e-37 158.3 276 37.0
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.3e-36 157.9 265 39.2
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 1.3e-36 157.9 265 39.2
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 1.3e-36 157.9 265 39.2
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 1.3e-36 157.9 254 39.8
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.3e-36 157.9 275 39.6
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 1.7e-36 157.5 275 38.2
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 1.7e-36 157.5 317 36.3
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 2.2e-36 157.1 306 36.9
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.2e-36 157.1 305 36.4
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.2e-36 157.1 273 38.1
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.9e-36 156.8 325 34.8
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.9e-36 156.8 315 34.0
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 3.8e-36 156.4 258 40.3
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 3.8e-36 156.4 320 34.4
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 4.9e-36 156.0 280 36.8
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.1e-35 154.8 324 36.7
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 1.1e-35 154.8 305 36.7
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.4e-35 154.5 271 38.0
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.4e-35 154.5 318 36.8
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.4e-35 154.5 272 36.8
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 1.4e-35 154.5 272 37.1
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.9e-35 154.1 319 36.4
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 1.9e-35 154.1 257 37.7
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 1.9e-35 154.1 286 36.7
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.4e-35 153.7 297 34.7
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 2.4e-35 153.7 272 37.1
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 2.4e-35 153.7 277 38.3
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 3.2e-35 153.3 273 37.0
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 3.2e-35 153.3 272 36.4
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 4.2e-35 152.9 323 36.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 4.2e-35 152.9 263 37.6
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 4.2e-35 152.9 257 39.3
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 9.3e-35 151.8 268 39.2
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 1.2e-34 151.4 268 39.2
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 1.6e-34 151.0 256 38.3
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 1.6e-34 151.0 248 41.5
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 6.0e-34 149.1 316 36.1
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 7.8e-34 148.7 312 35.3
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.8e-34 148.7 316 35.1
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.0e-33 148.3 307 36.2
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 1.0e-33 148.3 319 35.4
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 1.0e-33 148.3 316 35.1
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.3e-33 147.9 324 35.8
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 1.3e-33 147.9 316 35.4
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 1.3e-33 147.9 316 35.4
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.3e-33 147.1 308 35.7
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 2.3e-33 147.1 273 37.7
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 3.0e-33 146.7 294 33.3
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 3.0e-33 146.7 277 36.8
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 3.9e-33 146.4 275 36.7
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 3.9e-33 146.4 171 46.8
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 3.9e-33 146.4 268 38.1
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 5.1e-33 146.0 266 38.3
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 5.1e-33 146.0 278 37.4
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 1.1e-32 144.8 245 40.0
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 1.1e-32 144.8 268 37.3
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.5e-32 144.4 320 36.2
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 1.5e-32 144.4 287 36.2
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 2.5e-32 143.7 268 37.7
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 2.5e-32 143.7 268 36.9
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 3.3e-32 143.3 309 35.6
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 4.3e-32 142.9 277 35.7
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 4.3e-32 142.9 264 37.9
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.3e-32 142.1 307 35.5
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 7.3e-32 142.1 313 34.5
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 9.6e-32 141.7 279 37.3
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.6e-31 141.0 256 37.9
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 2.8e-31 140.2 271 37.6
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 1.1e-30 138.3 115 60.0
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.1e-30 138.3 260 39.2
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 4.0e-30 136.3 266 35.0
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 9.0e-30 135.2 121 57.0
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.2e-29 134.8 304 32.6
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 1.5e-29 134.4 270 35.6
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.0e-29 134.0 311 35.4
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 9.9e-29 131.7 289 34.9
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.8e-28 129.8 123 53.7
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 3.8e-28 129.8 136 51.5
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 4.9e-28 129.4 118 54.2
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 5.4e-27 125.9 163 43.6
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.3e-27 125.2 171 41.5
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.2e-26 124.8 117 53.8
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.6e-26 124.4 114 57.0
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 3.5e-26 123.2 315 31.7
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 3.5e-26 123.2 104 58.7
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 4.6e-26 122.9 95 61.1
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.3e-25 120.6 121 52.1
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.0e-25 120.2 163 43.6
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 2.4e-22 110.5 208 37.5
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 9.0e-22 108.6 86 61.6
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 1.2e-21 108.2 238 34.0
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 1.3e-20 104.8 230 33.9
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 6.4e-20 102.4 239 33.5
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 1.1e-19 101.7 271 34.7
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.4e-19 101.3 237 35.0
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 2.4e-19 100.5 249 33.7
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 7.1e-19 99.0 240 34.6
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 9.3e-19 98.6 280 32.5
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 3.5e-18 96.7 313 29.4
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 1.3e-17 94.7 287 29.6
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.8e-17 94.4 290 30.3
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 7.4e-16 89.0 61 63.9
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.5e-13 81.3 181 33.7
ATR0767G216 Amborella trichopoda HOM05D017516 ORTHO05D019582 2.6e-13 80.5 241 28.6
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 1.3e-12 78.2 278 28.4
TAR256G0009 Trochodendron aralioides HOM05D017516 ORTHO05D019582 1.7e-12 77.8 238 28.6
MBI16_g27899_MAGBIO Magnolia biondii HOM05D017516 ORTHO05D019582 1.4e-11 74.7 233 27.5
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.9e-11 74.3 84 51.2
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 4.2e-11 73.2 248 29.0
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 2.1e-10 70.9 156 33.3
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 1.0e-09 68.6 246 28.5
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.3e-09 67.4 39 71.8
MCO04G029 Micromonas commoda HOM05D003598 ORTHO05D004198 3.0e-09 67.0 57 56.1
Ca_03029_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 5.1e-09 66.2 36 69.4
Nn5g29826 Nelumbo nucifera HOM05D017516 ORTHO05D019582 6.7e-09 65.9 123 34.1
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 8.7e-09 65.5 144 33.3
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 1.5e-08 64.7 122 36.1
Dinv42595 Davidia involucrata HOM05D017516 ORTHO05D019582 1.9e-08 64.3 235 28.5
GSVIVG01009204001 Vitis vinifera HOM05D017516 ORTHO05D019582 2.1e-07 60.8 271 25.1


User provided reference genes

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