Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 3.8e-106 388.3 209 100.0
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 1.0e-21 107.8 154 44.8
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.7e-21 107.1 154 44.8
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.7e-21 107.1 132 47.7
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.1e-20 104.4 174 44.8
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 1.1e-20 104.4 139 45.3
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 1.4e-20 104.0 118 52.5
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.4e-20 104.0 119 47.9
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 2.5e-20 103.2 119 52.1
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 2.5e-20 103.2 140 45.7
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 2.5e-20 103.2 158 41.1
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 5.5e-20 102.1 130 47.7
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 9.3e-20 101.3 146 43.2
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 9.3e-20 101.3 141 44.0
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 9.3e-20 101.3 150 44.7
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 9.3e-20 101.3 147 44.9
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 1.2e-19 100.9 145 43.4
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.2e-19 100.9 150 44.0
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.6e-19 100.5 129 45.7
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.6e-19 100.5 122 47.5
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 2.1e-19 100.1 121 47.1
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 2.1e-19 100.1 115 47.0
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 2.1e-19 100.1 123 46.3
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 2.7e-19 99.8 129 45.0
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 2.7e-19 99.8 87 57.5
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 3.5e-19 99.4 118 50.0
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 3.5e-19 99.4 115 48.7
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 3.5e-19 99.4 140 44.3
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.5e-19 99.4 145 42.8
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 6.0e-19 98.6 152 43.4
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 7.9e-19 98.2 115 47.8
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 7.9e-19 98.2 142 47.9
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 7.9e-19 98.2 118 45.8
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 7.9e-19 98.2 133 45.9
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 7.9e-19 98.2 150 43.3
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 7.9e-19 98.2 140 43.6
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 7.9e-19 98.2 136 45.6
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 1.3e-18 97.4 144 42.4
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.3e-18 97.4 116 47.4
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 1.3e-18 97.4 144 42.4
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 1.3e-18 97.4 144 42.4
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.3e-18 97.4 153 43.1
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 1.3e-18 97.4 133 45.9
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 1.3e-18 97.4 118 49.2
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.3e-18 97.4 150 42.0
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 1.8e-18 97.1 118 49.2
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 1.8e-18 97.1 150 44.0
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 2.3e-18 96.7 117 47.9
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 3.0e-18 96.3 117 47.9
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 3.9e-18 95.9 158 41.8
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 5.1e-18 95.5 135 44.4
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 5.1e-18 95.5 146 41.8
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 5.1e-18 95.5 135 44.4
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 6.7e-18 95.1 147 42.2
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 6.7e-18 95.1 144 43.8
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 6.7e-18 95.1 118 44.9
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 8.7e-18 94.7 141 43.3
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 8.7e-18 94.7 133 43.6
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 8.7e-18 94.7 150 41.3
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 8.7e-18 94.7 128 44.5
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.1e-17 94.4 131 43.5
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 1.5e-17 94.0 119 44.5
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 1.9e-17 93.6 128 45.3
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 1.9e-17 93.6 142 42.3
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.9e-17 93.6 155 38.7
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 2.5e-17 93.2 142 42.3
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 3.3e-17 92.8 89 53.9
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.3e-17 92.8 147 41.5
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 3.3e-17 92.8 145 42.8
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 4.3e-17 92.4 146 39.7
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 4.3e-17 92.4 142 42.3
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 4.3e-17 92.4 140 43.6
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 5.7e-17 92.0 154 40.3
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 5.7e-17 92.0 144 40.3
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 7.4e-17 91.7 134 41.8
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 7.4e-17 91.7 148 39.9
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 1.3e-16 90.9 135 40.7
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 1.3e-16 90.9 147 42.9
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 1.3e-16 90.9 148 39.9
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.3e-16 90.9 149 40.9
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 2.8e-16 89.7 157 41.4
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 2.8e-16 89.7 154 41.6
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 3.7e-16 89.4 150 42.0
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 4.8e-16 89.0 134 42.5
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 4.8e-16 89.0 94 51.1
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 4.8e-16 89.0 154 39.0
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 6.2e-16 88.6 159 40.9
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 6.2e-16 88.6 117 48.7
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.1e-15 87.8 119 46.2
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 1.4e-15 87.4 96 53.1
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.4e-15 86.7 140 39.3
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 5.3e-15 85.5 121 47.1
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 3.4e-14 82.8 156 37.2
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 5.8e-14 82.0 133 41.4
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 2.2e-13 80.1 88 48.9
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.9e-13 79.7 135 41.5
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 5.0e-13 79.0 154 39.6
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 1.4e-12 77.4 124 44.4
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.9e-12 77.0 140 37.9
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 2.5e-12 76.6 117 43.6
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 4.2e-12 75.9 151 38.4
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 6.7e-10 68.6 143 36.4
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.7e-10 68.2 85 45.9
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.5e-09 66.6 83 48.2
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 7.4e-09 65.1 54 57.4
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.3e-08 64.3 83 47.0
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 2.4e-07 60.1 143 35.7
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 2.4e-07 60.1 117 38.5
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 3.1e-07 59.7 143 35.7
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.5e-06 57.4 96 40.6
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 2.0e-06 57.0 148 33.1
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 4.5e-06 55.8 37 67.6


User provided reference genes

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