Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 0.0e+00 1149.0 585 100.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.5e-212 740.7 593 67.1
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.5e-88 330.1 524 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.8e-73 281.2 573 34.0
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.6e-72 278.1 549 34.8
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.6e-69 266.9 552 33.9
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.6e-69 266.9 552 33.9
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.4e-65 253.1 540 34.3
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-56 224.9 483 33.3
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.7e-56 224.2 424 35.4
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.8e-53 214.2 460 32.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.3e-52 211.1 472 32.8
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 4.1e-49 200.3 547 31.8
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 6.6e-47 193.0 519 31.0
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 9.8e-43 179.1 297 37.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 3.7e-42 177.2 305 36.7
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 4.9e-42 176.8 313 36.7
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.2e-40 172.2 350 34.6
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.1e-40 171.4 224 42.4
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 2.1e-40 171.4 551 26.5
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 4.6e-40 170.2 253 37.5
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 6.0e-40 169.9 286 38.5
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.3e-39 168.7 220 40.9
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.3e-39 168.7 286 37.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.9e-39 167.2 289 37.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 6.6e-39 166.4 253 38.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 8.6e-39 166.0 336 36.6
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-38 164.9 317 34.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.9e-38 164.9 238 42.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 4.3e-38 163.7 232 42.7
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.1e-37 161.4 242 41.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.1e-37 161.4 299 37.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 4.7e-37 160.2 329 33.7
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.2e-37 159.8 341 32.8
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 6.2e-37 159.8 304 35.5
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.2e-37 159.8 316 34.5
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 6.2e-37 159.8 290 35.9
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 8.1e-37 159.5 366 31.7
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.4e-36 158.7 491 28.3
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.8e-36 158.3 221 42.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.3e-36 157.9 297 35.7
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-36 157.9 316 34.8
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.3e-36 157.9 319 34.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.1e-36 157.5 341 33.1
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 3.1e-36 157.5 303 37.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.0e-36 157.1 316 34.2
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.9e-36 156.0 309 35.9
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 8.9e-36 156.0 351 31.3
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 8.9e-36 156.0 300 38.3
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.2e-35 155.6 309 35.6
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-35 155.6 309 35.6
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.2e-35 155.6 304 35.9
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.5e-35 155.2 387 32.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.0e-35 154.8 309 35.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.0e-35 154.8 221 41.6
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.6e-35 154.5 293 36.5
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.6e-35 154.5 306 36.6
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.6e-35 154.5 309 35.0
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.6e-35 154.5 288 37.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.6e-35 154.5 229 41.0
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.4e-35 154.1 310 36.1
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.4e-35 154.1 221 42.5
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.4e-35 154.1 221 41.6
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.8e-35 153.3 224 39.7
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 5.8e-35 153.3 225 39.6
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 5.8e-35 153.3 363 33.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 7.6e-35 152.9 237 40.9
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 9.9e-35 152.5 310 36.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 9.9e-35 152.5 315 33.7
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.3e-34 152.1 399 30.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-34 151.8 314 35.4
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-34 151.8 314 35.4
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.7e-34 151.8 314 35.4
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 2.2e-34 151.4 254 37.4
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.9e-34 151.0 219 39.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 2.9e-34 151.0 317 36.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.7e-34 150.6 295 36.3
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.7e-34 150.6 323 35.0
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 4.9e-34 150.2 229 38.9
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 6.4e-34 149.8 221 40.7
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 6.4e-34 149.8 221 40.7
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 6.4e-34 149.8 221 40.7
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.4e-34 149.8 288 36.5
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-33 149.1 288 35.4
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.4e-33 148.7 306 35.9
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.4e-33 148.7 399 31.3
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.4e-33 147.9 220 39.1
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.4e-33 147.9 230 38.3
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 3.2e-33 147.5 263 39.2
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 3.2e-33 147.5 313 34.8
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.2e-33 147.5 299 34.1
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 7.1e-33 146.4 221 40.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-32 145.6 221 40.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.7e-32 144.4 402 31.1
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-31 142.5 240 36.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.0e-31 142.5 226 39.8
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.0e-31 142.5 244 36.1
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.3e-31 142.1 308 35.1
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.7e-31 141.7 223 40.8
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.9e-31 140.6 222 41.9
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.9e-31 140.6 222 41.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.9e-31 140.6 298 36.6
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 5.1e-31 140.2 220 37.3
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 6.6e-31 139.8 343 30.9
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.6e-31 139.8 268 32.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 8.6e-31 139.4 305 34.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.1e-30 139.0 395 30.9
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.9e-30 138.3 295 33.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 3.3e-30 137.5 223 37.7
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.3e-30 137.5 216 39.8
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 4.3e-30 137.1 386 30.3
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.3e-30 136.3 314 33.4
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.2e-29 135.6 227 35.7
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.2e-29 135.6 220 40.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.2e-29 135.6 222 36.9
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.6e-29 135.2 286 31.1
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.6e-29 135.2 295 34.6
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.6e-29 135.2 284 34.9
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 2.1e-29 134.8 293 34.1
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.2e-29 133.3 213 39.4
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.4e-28 132.1 300 31.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.8e-28 131.7 217 36.9
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 5.2e-28 130.2 294 31.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 6.8e-28 129.8 204 38.2
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 8.9e-28 129.4 323 30.3
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 8.9e-28 129.4 225 35.6
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 8.9e-28 129.4 310 30.0
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.2e-27 129.0 291 34.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.2e-27 129.0 322 29.5
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.6e-27 127.9 312 31.1
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.8e-27 126.7 361 29.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.7e-26 125.2 221 37.1
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.8e-26 124.0 220 35.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.9e-26 123.6 217 35.0
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 6.4e-26 123.2 286 31.5
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.9e-25 121.7 219 34.2
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.4e-25 121.3 219 31.1
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 9.3e-25 119.4 204 36.3
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.2e-24 119.0 359 28.4
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.6e-24 118.6 220 35.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.6e-24 118.6 305 30.2
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.1e-24 118.2 319 30.7
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 4.6e-24 117.1 287 32.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.0e-23 115.9 289 30.4
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 2.3e-23 114.8 248 31.0
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.0e-23 114.4 162 40.1
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 8.7e-23 112.8 220 33.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 2.8e-21 107.8 221 33.0
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.4e-20 105.5 197 39.6
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.7e-18 98.6 189 32.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.2e-16 92.4 148 37.2
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.6e-16 90.5 246 28.9
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.0e-15 89.4 246 31.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.4e-12 79.0 178 33.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.8e-12 78.6 97 37.1
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 4.0e-12 77.4 86 46.5
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 5.8e-11 73.6 148 33.1
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-10 72.0 102 38.2
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-10 72.0 102 38.2


User provided reference genes

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