Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.3e-78 294.3 148 100.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.4e-46 188.0 146 60.3
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-38 162.5 144 54.9
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-38 162.5 144 54.9
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.2e-29 133.7 128 51.6
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 7.8e-29 131.0 130 50.8
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.0e-28 130.6 127 52.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.3e-28 130.2 132 51.5
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.3e-28 129.4 132 50.8
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.0e-28 129.0 134 48.5
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 3.9e-28 128.6 135 51.1
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.9e-28 128.6 138 50.7
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 6.6e-28 127.9 127 51.2
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 8.6e-28 127.5 135 48.9
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.1e-27 127.1 132 50.0
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.1e-27 127.1 135 48.1
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.9e-27 126.3 127 50.4
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 4.3e-27 125.2 135 48.1
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 4.3e-27 125.2 127 47.2
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 4.3e-27 125.2 127 49.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.6e-27 124.8 127 52.0
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.5e-27 124.0 130 47.7
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-26 123.6 127 47.2
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-26 123.6 130 48.5
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-26 123.6 130 48.5
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.6e-26 123.2 127 49.6
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.6e-26 123.2 127 46.5
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.6e-26 123.2 127 47.2
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.6e-26 123.2 127 50.4
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-26 123.2 127 50.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.6e-26 123.2 131 48.9
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.6e-26 123.2 127 50.4
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.1e-26 122.9 123 48.8
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.8e-26 122.5 127 48.0
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.8e-26 122.5 127 48.0
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.8e-26 122.5 127 48.0
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 2.8e-26 122.5 127 51.2
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 3.6e-26 122.1 127 46.5
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.7e-26 121.7 127 46.5
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 6.2e-26 121.3 111 50.5
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 6.2e-26 121.3 127 48.8
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 8.0e-26 120.9 135 44.4
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 8.0e-26 120.9 135 45.2
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.1e-25 120.6 127 44.1
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.1e-25 120.6 127 47.2
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-25 120.6 124 47.6
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.4e-25 120.2 127 45.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.8e-25 119.8 127 44.1
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.8e-25 119.8 127 44.1
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-25 119.8 131 48.1
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-25 119.8 128 49.2
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.3e-25 119.4 131 45.8
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.3e-25 119.4 127 48.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.3e-25 119.4 127 45.7
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.1e-25 119.0 123 48.8
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.1e-25 119.0 131 45.8
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 3.1e-25 119.0 107 50.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 3.1e-25 119.0 127 47.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.1e-25 119.0 127 46.5
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 4.0e-25 118.6 131 45.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 4.0e-25 118.6 131 45.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 4.0e-25 118.6 131 45.0
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 4.0e-25 118.6 127 44.9
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.0e-25 118.6 131 46.6
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 4.0e-25 118.6 127 46.5
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 4.0e-25 118.6 127 45.7
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.2e-25 118.2 127 44.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.2e-25 118.2 131 47.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 5.2e-25 118.2 127 47.2
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 5.2e-25 118.2 131 48.9
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.2e-25 118.2 124 49.2
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 5.2e-25 118.2 123 48.8
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 5.2e-25 118.2 127 44.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 5.2e-25 118.2 124 46.0
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.2e-25 118.2 131 45.0
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.8e-25 117.9 127 45.7
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 6.8e-25 117.9 127 44.9
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 6.8e-25 117.9 127 48.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 6.8e-25 117.9 120 50.0
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 6.8e-25 117.9 135 45.9
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.9e-25 117.5 131 47.3
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 8.9e-25 117.5 131 47.3
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 8.9e-25 117.5 131 45.0
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-24 117.1 119 49.6
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.5e-24 116.7 131 45.8
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.5e-24 116.7 116 45.7
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.0e-24 116.3 132 47.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.0e-24 116.3 127 44.1
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.6e-24 115.9 127 45.7
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.6e-24 115.9 119 45.4
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 3.4e-24 115.5 127 47.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 3.4e-24 115.5 127 44.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 3.4e-24 115.5 131 46.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 4.4e-24 115.2 127 44.9
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 5.8e-24 114.8 131 48.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 5.8e-24 114.8 119 47.9
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 5.8e-24 114.8 135 44.4
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 5.8e-24 114.8 124 44.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 7.5e-24 114.4 128 49.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 9.8e-24 114.0 127 45.7
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 9.8e-24 114.0 127 44.1
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.3e-23 113.6 136 44.1
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.3e-23 113.6 134 44.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.9e-23 112.5 123 44.7
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 2.9e-23 112.5 127 42.5
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.9e-23 112.5 131 43.5
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 2.9e-23 112.5 127 44.1
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 2.9e-23 112.5 127 45.7
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.9e-23 112.5 127 45.7
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 3.7e-23 112.1 124 45.2
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 4.9e-23 111.7 146 41.1
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.3e-23 110.9 135 43.7
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 8.3e-23 110.9 127 44.9
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 8.3e-23 110.9 124 45.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.1e-22 110.5 119 45.4
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.4e-22 110.2 127 43.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-22 109.8 135 43.7
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.9e-22 109.8 135 43.7
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.4e-22 109.4 147 40.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 3.2e-22 109.0 136 41.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 3.2e-22 109.0 127 43.3
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 3.2e-22 109.0 123 43.9
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 5.4e-22 108.2 127 42.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 5.4e-22 108.2 101 51.5
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 5.4e-22 108.2 114 44.7
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 7.0e-22 107.8 111 46.8
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 9.2e-22 107.5 131 48.1
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.1e-21 106.3 140 42.1
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 7.8e-21 104.4 155 37.4
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.3e-20 103.6 127 42.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 3.0e-20 102.4 114 43.0
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 3.9e-20 102.1 127 43.3
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 5.1e-20 101.7 127 43.3
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.1e-20 101.7 134 40.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.9e-19 99.8 135 39.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 3.3e-19 99.0 127 41.7
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.3e-19 99.0 127 44.1
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 9.5e-19 97.4 132 43.9
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 9.5e-19 97.4 129 44.2
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.1e-18 96.3 128 43.0
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.8e-18 95.9 92 51.1
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 4.7e-18 95.1 134 38.8
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 8.1e-18 94.4 138 39.1
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-17 93.2 138 39.9
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.1e-17 92.4 126 38.9
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 7.5e-16 87.8 99 40.4
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.3e-15 87.0 75 54.7
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-15 86.7 99 41.4
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.1e-14 84.0 88 40.9
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 7.1e-14 81.3 127 37.8
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.6e-13 80.1 111 39.6
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.0e-13 78.2 89 43.8
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 3.3e-11 72.4 114 36.8
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.3e-11 72.4 104 36.5
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.3e-07 60.5 76 38.2
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.3e-07 60.5 53 43.4
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.2e-07 59.7 59 42.4


User provided reference genes

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