Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.1e-78 295.0 148 100.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.1e-78 295.0 148 100.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.7e-45 184.1 148 58.1
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.3e-39 164.5 125 63.2
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 8.3e-39 164.1 140 60.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.1e-38 163.7 134 59.7
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.1e-38 163.7 134 59.7
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 5.4e-38 161.4 136 58.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.7e-37 159.1 129 62.0
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.7e-37 159.1 129 62.0
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.5e-37 158.3 139 57.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.8e-37 157.5 144 54.9
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.8e-37 157.5 131 61.1
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.0e-36 157.1 127 59.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.3e-36 156.8 140 55.0
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 5.0e-36 154.8 125 60.0
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 6.6e-36 154.5 132 54.5
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 8.6e-36 154.1 129 59.7
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.1e-35 153.7 133 57.1
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.9e-35 152.9 132 57.6
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.5e-35 152.5 126 57.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.3e-35 152.1 132 56.8
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 3.3e-35 152.1 125 61.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.6e-35 151.4 132 56.8
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 5.6e-35 151.4 132 56.8
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 7.3e-35 151.0 125 60.8
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 7.3e-35 151.0 125 60.8
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 7.3e-35 151.0 125 62.4
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 9.5e-35 150.6 125 59.2
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-34 150.2 125 60.8
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.1e-34 149.4 125 56.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.1e-34 149.4 111 64.9
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.8e-34 149.1 129 60.5
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.8e-34 149.1 129 56.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 3.6e-34 148.7 126 58.7
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 4.7e-34 148.3 125 56.8
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 4.7e-34 148.3 125 60.8
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 6.1e-34 147.9 125 58.4
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 8.0e-34 147.5 126 57.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 8.0e-34 147.5 126 55.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 8.0e-34 147.5 125 57.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.0e-33 147.1 132 53.0
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.0e-33 147.1 140 53.6
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.4e-33 146.7 125 58.4
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.8e-33 146.4 133 53.4
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.8e-33 146.4 125 56.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.8e-33 146.4 128 54.7
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.8e-33 146.4 125 56.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.0e-33 145.6 124 58.1
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.0e-33 145.6 124 59.7
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 4.0e-33 145.2 125 59.2
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 4.0e-33 145.2 125 56.8
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 5.2e-33 144.8 132 56.8
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 8.9e-33 144.1 125 52.8
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 8.9e-33 144.1 126 56.3
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 8.9e-33 144.1 125 57.6
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 8.9e-33 144.1 124 56.5
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 8.9e-33 144.1 125 56.0
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.2e-32 143.7 133 55.6
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.2e-32 143.7 126 57.9
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.5e-32 143.3 126 54.0
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.5e-32 143.3 125 56.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.0e-32 142.9 125 57.6
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.0e-32 142.9 128 53.1
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 2.6e-32 142.5 119 57.1
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 2.6e-32 142.5 125 57.6
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 4.4e-32 141.7 133 51.1
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 4.4e-32 141.7 124 56.5
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.4e-32 141.7 125 54.4
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 5.8e-32 141.4 124 56.5
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 5.8e-32 141.4 128 53.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 5.8e-32 141.4 128 53.9
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 5.8e-32 141.4 124 56.5
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 5.8e-32 141.4 125 56.8
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.8e-32 141.4 131 55.0
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 9.8e-32 140.6 125 56.0
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 9.8e-32 140.6 131 51.1
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.3e-31 140.2 125 52.8
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-31 140.2 125 52.8
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.3e-31 140.2 125 52.8
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.3e-31 140.2 132 51.5
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.3e-31 140.2 125 56.0
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.7e-31 139.8 125 54.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.7e-31 139.8 125 52.0
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.7e-31 139.8 125 55.2
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 2.2e-31 139.4 125 51.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.2e-31 139.4 126 53.2
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.2e-31 139.4 133 54.1
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.9e-31 139.0 125 51.2
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-31 139.0 125 52.8
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-31 139.0 131 51.1
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 3.7e-31 138.7 125 51.2
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 3.7e-31 138.7 131 51.1
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.7e-31 138.7 124 54.0
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.7e-31 138.7 133 54.1
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.7e-31 138.7 133 54.1
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.7e-31 138.7 131 50.4
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 4.9e-31 138.3 125 52.0
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.9e-31 138.3 125 51.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 4.9e-31 138.3 129 54.3
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 4.9e-31 138.3 124 57.3
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 6.4e-31 137.9 124 54.8
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 8.3e-31 137.5 131 50.4
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 8.3e-31 137.5 137 53.3
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.4e-30 136.7 125 52.0
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.4e-30 136.7 111 60.4
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.4e-30 136.7 119 55.5
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.9e-30 136.3 125 52.8
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.4e-30 136.0 125 52.0
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.4e-30 136.0 125 52.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 3.2e-30 135.6 126 50.8
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 3.2e-30 135.6 127 55.1
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.1e-30 135.2 125 48.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 5.4e-30 134.8 126 54.0
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 9.2e-30 134.0 126 50.0
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 9.2e-30 134.0 111 59.5
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.2e-29 133.7 130 50.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.2e-29 133.7 126 52.4
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.2e-29 133.7 125 54.4
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.6e-29 133.3 134 49.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.0e-29 132.9 125 52.0
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-29 132.9 125 54.4
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 2.0e-29 132.9 126 50.0
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 4.6e-29 131.7 160 42.5
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 6.0e-29 131.3 126 53.2
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.7e-28 129.8 141 46.8
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.7e-28 129.8 111 55.0
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.3e-28 129.4 125 51.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 3.0e-28 129.0 109 55.0
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-27 127.1 150 44.7
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.5e-27 125.9 107 57.9
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 5.6e-27 124.8 134 45.5
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-26 123.6 107 56.1
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.8e-26 122.5 131 48.9
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.1e-25 120.6 161 42.2
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.1e-25 119.0 103 57.3
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 4.4e-24 115.2 110 49.1
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.8e-24 114.8 90 63.3
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 8.3e-23 110.9 99 54.5
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.1e-22 110.5 140 41.4
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-22 110.5 99 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.7e-21 105.9 138 45.7
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.3e-20 102.8 75 61.3
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 4.3e-19 98.6 129 43.4
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 7.3e-19 97.8 83 53.0
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.2e-18 94.7 136 38.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.1e-17 94.0 124 41.9
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.4e-17 93.6 147 38.8
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.2e-16 90.5 133 43.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.9e-16 87.4 105 42.9
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-15 87.0 125 40.0
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.1e-14 84.0 110 40.9
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.1e-13 79.7 90 44.4
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 6.0e-13 78.2 54 59.3
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 8.6e-12 74.3 138 32.6
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 6.8e-09 64.7 59 49.2
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 6.8e-09 64.7 61 47.5
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.5e-08 63.5 115 36.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 6.4e-07 58.2 82 40.2
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 2.4e-06 56.2 42 61.9
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 9.2e-06 54.3 45 57.8
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 9.2e-06 54.3 45 57.8
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 9.2e-06 54.3 45 57.8


User provided reference genes

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