Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 0.0e+00 1320.4 666 100.0
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 2.0e-164 583.6 669 48.4
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 2.6e-164 583.2 692 47.3
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 4.4e-164 582.4 692 47.1
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 2.8e-163 579.7 675 49.3
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.8e-162 577.0 705 46.8
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 2.4e-162 576.6 676 49.1
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 3.1e-162 576.2 690 48.1
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 9.2e-162 574.7 654 51.1
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 9.2e-162 574.7 669 47.8
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 9.2e-162 574.7 705 46.8
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.6e-161 573.9 674 49.1
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 3.5e-161 572.8 691 49.1
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 7.8e-161 571.6 674 49.1
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 7.8e-161 571.6 691 48.6
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 1.0e-160 571.2 693 48.1
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 1.3e-160 570.9 669 48.4
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 2.9e-160 569.7 678 48.5
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.5e-159 566.6 703 46.5
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 5.6e-159 565.5 711 47.0
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 5.6e-159 565.5 682 46.2
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 5.6e-159 565.5 679 48.5
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 3.6e-158 562.8 578 52.2
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 8.0e-158 561.6 673 47.3
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.0e-157 561.2 670 48.5
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 1.4e-157 560.8 677 47.7
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.8e-157 560.5 676 47.3
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 3.0e-157 559.7 681 47.4
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 5.2e-157 558.9 675 47.0
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 5.2e-157 558.9 672 47.9
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 6.8e-157 558.5 668 47.0
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 1.2e-156 557.8 667 48.4
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 2.0e-156 557.0 674 47.2
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.6e-156 556.6 687 46.6
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 3.4e-156 556.2 667 48.0
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 3.4e-156 556.2 692 45.5
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 3.4e-156 556.2 703 46.7
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 3.4e-156 556.2 636 49.5
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 7.5e-156 555.1 672 47.6
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 4.9e-155 552.4 706 45.6
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 4.9e-155 552.4 686 47.2
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 6.4e-155 552.0 680 47.1
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.8e-154 550.4 669 47.2
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 4.1e-154 549.3 672 47.5
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.0e-154 548.5 702 46.2
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 9.2e-154 548.1 706 46.6
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.6e-153 547.4 681 46.0
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.0e-153 547.0 683 45.7
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 2.0e-153 547.0 691 46.0
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 2.7e-153 546.6 676 46.2
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 2.7e-153 546.6 687 46.1
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 2.7e-153 546.6 695 46.5
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 4.6e-153 545.8 644 45.8
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 4.6e-153 545.8 664 47.9
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 7.8e-153 545.0 738 44.6
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.0e-152 544.7 680 46.2
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 2.3e-152 543.5 699 45.2
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 3.0e-152 543.1 683 45.7
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 5.0e-152 542.3 683 45.5
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 6.6e-152 542.0 684 45.5
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.1e-151 541.2 646 46.9
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 1.5e-151 540.8 684 45.9
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 2.5e-151 540.0 691 45.7
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 1.6e-150 537.3 688 46.2
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 2.1e-150 537.0 689 46.7
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 2.8e-150 536.6 606 49.7
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.8e-150 536.6 743 44.3
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.8e-149 533.9 712 44.7
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 2.3e-149 533.5 695 45.8
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 4.0e-149 532.7 706 44.6
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 8.9e-149 531.6 685 45.7
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 3.4e-148 529.6 696 45.8
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.3e-147 527.7 644 46.6
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.7e-145 520.0 657 46.3
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 6.0e-145 518.8 631 46.3
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 3.9e-144 516.2 680 44.7
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.9e-144 516.2 638 45.8
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 8.6e-144 515.0 670 45.4
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 1.9e-143 513.8 637 45.7
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 3.1e-141 506.5 657 46.0
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 6.8e-141 505.4 561 49.9
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.0e-140 503.8 677 44.0
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 8.3e-139 498.4 686 44.8
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.9e-138 497.3 649 45.0
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 5.4e-138 495.7 692 45.1
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 5.4e-138 495.7 685 43.2
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 3.3e-135 486.5 485 53.2
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 3.8e-131 473.0 567 48.0
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 5.4e-130 469.2 751 39.9
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.3e-115 421.4 428 52.3
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.3e-112 410.6 419 52.7
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 3.0e-112 410.2 448 50.2
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.3e-110 404.8 384 56.8
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 2.3e-104 384.0 286 67.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 3.9e-96 356.7 594 38.7
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 1.9e-87 327.8 578 37.9
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.3e-85 319.7 460 42.2
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 9.1e-85 318.9 451 42.8
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 7.7e-84 315.8 275 59.3
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 4.2e-82 310.1 553 36.7
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.1e-77 293.5 264 58.7
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 7.7e-76 289.3 204 69.1
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 2.5e-74 284.3 488 37.9
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.0e-71 274.6 258 56.2
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 3.5e-68 263.8 372 43.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 7.7e-68 262.7 370 42.7
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 4.1e-61 240.4 279 48.0
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.2e-60 238.8 185 61.1
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 5.9e-60 236.5 279 47.7
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-59 235.3 224 57.6
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 5.0e-59 233.4 167 68.3
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 3.2e-58 230.7 327 44.3
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.5e-55 221.9 188 57.4
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.4e-55 220.7 226 54.4
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 4.5e-52 210.3 486 33.5
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 1.2e-49 202.2 153 63.4
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.6e-47 194.5 358 36.3
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 6.3e-46 189.9 375 36.3
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 7.3e-42 176.4 134 59.7
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 3.6e-33 147.5 461 28.4
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 3.9e-27 127.5 231 35.5
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 3.4e-23 114.4 96 57.3
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.1e-21 107.5 111 46.8
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.1e-19 100.5 111 45.9
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 5.6e-18 97.1 216 33.3
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 2.1e-17 95.1 155 43.9
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.9e-16 89.7 111 41.4
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 2.3e-11 75.1 52 76.9
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.9e-10 72.0 111 35.1
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 6.2e-09 67.0 66 45.5
Pp3c3_2850 Physcomitrium patens HOM05D005523 ORTHO05D313569 4.0e-08 64.3 82 45.1
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 1.3e-06 59.3 100 35.0
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 2.2e-06 58.5 51 51.0


User provided reference genes

Program Settings