Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.5e-142 508.8 270 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 3.9e-79 298.9 254 60.2
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.0e-78 296.6 261 63.6
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.8e-74 282.3 258 58.1
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.9e-73 280.0 263 55.5
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.0e-71 272.7 252 57.9
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 5.1e-71 271.9 247 57.5
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 5.1e-71 271.9 257 56.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 6.7e-71 271.6 251 57.8
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 6.7e-71 271.6 247 57.9
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 8.8e-71 271.2 252 57.5
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 8.8e-71 271.2 252 57.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.1e-70 270.8 249 56.6
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-70 270.8 252 56.7
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.0e-70 270.0 247 57.1
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 2.6e-70 269.6 251 57.0
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 3.3e-70 269.2 247 57.1
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.3e-70 269.2 258 56.6
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.4e-70 268.9 252 57.1
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 5.7e-70 268.5 241 58.5
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 7.4e-70 268.1 241 58.1
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 7.4e-70 268.1 252 55.6
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 7.4e-70 268.1 259 56.0
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 9.7e-70 267.7 252 56.3
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.7e-69 266.9 255 56.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.7e-69 266.9 255 55.7
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.2e-69 266.5 249 57.8
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.8e-69 266.2 247 56.3
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.8e-69 266.2 241 58.5
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 3.7e-69 265.8 241 58.5
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 3.7e-69 265.8 262 55.7
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 6.3e-69 265.0 241 55.6
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 6.3e-69 265.0 247 56.7
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 6.3e-69 265.0 243 57.6
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 8.2e-69 264.6 255 57.3
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 8.2e-69 264.6 247 57.1
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 8.2e-69 264.6 262 53.4
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.4e-68 263.8 249 55.8
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.4e-68 263.8 258 53.9
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.4e-68 263.8 240 57.5
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.4e-68 263.8 261 54.4
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.8e-68 263.5 252 55.6
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.8e-68 263.5 240 57.9
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.4e-68 263.1 241 56.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.4e-68 263.1 252 54.8
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.4e-68 263.1 252 56.7
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.4e-68 263.1 241 58.1
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 4.1e-68 262.3 240 57.9
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.3e-68 261.9 252 55.6
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 5.3e-68 261.9 260 53.8
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 9.1e-68 261.2 241 56.4
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.2e-67 260.8 263 53.6
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.2e-67 260.8 261 53.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.2e-67 260.8 275 53.1
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.5e-67 260.4 255 54.5
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.5e-67 260.4 253 55.3
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.5e-67 260.4 253 53.8
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.5e-67 260.4 241 57.3
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 2.0e-67 260.0 241 56.8
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.5e-67 259.2 241 55.2
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 4.5e-67 258.8 247 55.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 4.5e-67 258.8 247 54.7
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 7.7e-67 258.1 246 56.1
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.0e-66 257.7 252 57.1
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.3e-66 257.3 252 55.6
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.3e-66 257.3 239 56.1
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.3e-66 257.3 252 55.6
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.3e-66 257.3 241 56.8
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 2.2e-66 256.5 269 52.4
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.2e-66 256.5 255 53.7
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 2.9e-66 256.1 255 53.7
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 5.0e-66 255.4 241 56.0
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 5.0e-66 255.4 252 55.2
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 5.5e-65 251.9 258 53.1
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 7.2e-65 251.5 248 54.8
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.6e-64 250.4 239 54.0
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.6e-64 250.4 291 48.5
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.4e-63 247.3 251 52.6
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.4e-63 247.3 257 53.3
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.8e-63 246.9 249 54.2
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 3.0e-63 246.1 241 56.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 8.8e-63 244.6 266 51.5
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 8.8e-63 244.6 237 57.0
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 8.8e-63 244.6 237 57.0
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.5e-62 243.8 229 56.8
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 4.4e-62 242.3 256 52.0
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 4.4e-62 242.3 326 45.4
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 4.4e-62 242.3 220 57.7
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 5.7e-62 241.9 238 54.2
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 5.7e-62 241.9 256 52.0
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 7.4e-62 241.5 256 51.6
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.7e-61 240.4 238 55.0
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 2.2e-61 240.0 255 51.4
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 2.2e-61 240.0 255 50.6
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.2e-61 240.0 256 51.2
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.8e-61 239.6 238 53.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 2.8e-61 239.6 238 53.8
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 6.3e-61 238.4 238 53.4
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.1e-60 237.7 238 53.8
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 3.1e-60 236.1 231 54.5
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 3.1e-60 236.1 310 45.2
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 4.1e-60 235.7 262 50.8
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.6e-59 233.0 251 50.6
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 2.6e-59 233.0 248 52.0
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 2.5e-57 226.5 244 52.5
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 8.8e-55 218.0 195 60.0
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.2e-54 217.6 191 61.3
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.5e-54 217.2 200 57.0
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.8e-52 210.3 198 58.1
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 4.1e-52 209.1 219 53.0
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 7.0e-52 208.4 170 63.5
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.0e-51 206.8 181 60.8
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.7e-51 206.5 231 51.9
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.9e-49 200.3 214 53.7
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.2e-48 197.6 196 55.6
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.4e-47 194.1 233 47.2
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 4.4e-46 189.1 297 42.1
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.8e-39 167.2 158 55.7
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.4e-38 162.5 156 56.4
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 7.5e-38 161.8 244 43.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.4e-36 156.8 147 57.1
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 3.9e-34 149.4 173 49.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.3e-31 140.2 166 47.6
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.6e-25 119.0 239 36.0
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 6.6e-18 95.5 92 57.6
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.0e-10 70.1 58 58.6
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 2.6e-06 57.0 71 42.3


User provided reference genes

Program Settings