Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_2910 Physcomitrium patens HOM05D003016 ORTHO05D009718 6.5e-40 166.8 75 100.0
Pp3c13_2960 Physcomitrium patens HOM05D003016 ORTHO05D009718 6.5e-40 166.8 75 100.0
Pp3c13_2610 Physcomitrium patens HOM05D003016 ORTHO05D009718 6.1e-30 133.7 74 79.7
Pp3c13_2820 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.3e-28 127.9 74 77.0
Pp3c2_29670 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.3e-24 115.9 73 74.0
Pp3c13_3110 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.0e-24 114.0 56 91.1
Pp3c14_13600 Physcomitrium patens HOM05D003016 ORTHO05D009718 6.5e-24 113.6 74 68.9
Pp3c13_15270 Physcomitrium patens HOM05D003016 ORTHO05D009718 4.2e-23 110.9 76 68.4
Pp3c13_15190 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.2e-22 109.4 76 67.1
Pp3c13_15200 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.2e-22 109.4 76 67.1
Pp3c13_21290 Physcomitrium patens HOM05D003016 ORTHO05D009718 4.7e-22 107.5 76 64.5
Pp3c14_6750 Physcomitrium patens HOM05D003016 ORTHO05D009718 6.1e-22 107.1 75 65.3
Pp3c11_13930 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.3e-21 105.1 74 66.2
Pp3c17_20870 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.9e-21 104.4 76 61.8
Pp3c17_20880 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.9e-21 104.4 76 61.8
Pp3c21_15570 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.9e-21 104.4 76 63.2
Pp3c21_17700 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.9e-21 104.4 74 66.2
Pp3c8_2360 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.9e-21 104.4 76 61.8
Pp3c13_21690 Physcomitrium patens HOM05D003016 ORTHO05D009718 8.8e-21 103.2 76 63.2
Pp3c16_23160 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.5e-20 102.4 76 60.5
Pp3c17_21730 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.6e-20 101.7 76 60.5
Pp3c17_21740 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.6e-20 101.7 76 60.5
Pp3c18_4530 Physcomitrium patens HOM05D003016 ORTHO05D009718 7.4e-20 100.1 76 60.5
Pp3c18_20820 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.3e-19 99.4 75 58.7
Pp3c8_2150 Physcomitrium patens HOM05D003016 ORTHO05D009718 4.8e-19 97.4 75 58.7
Pp3c21_6250 Physcomitrium patens HOM05D003016 ORTHO05D009718 8.2e-19 96.7 74 59.5
Pp3c18_2880 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.6e-17 92.4 75 54.7
Pp3c15_16800 Physcomitrium patens HOM05D003016 ORTHO05D000239 1.0e-16 89.7 75 53.3
Pp3c15_16810 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.0e-16 89.7 75 53.3
Pp3c7_17397 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.0e-16 89.7 62 61.3
Pp3c16_21720 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.3e-16 89.4 74 55.4
Pp3c20_15960 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.3e-16 89.4 76 53.9
Pp3c20_15970 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.3e-16 89.4 76 53.9
Pp3c6_5450 Physcomitrium patens HOM05D003016 ORTHO05D000239 1.3e-16 89.4 75 50.7
Pp3c6_5610 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.9e-16 88.2 76 52.6
Pp3c27_6820 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.8e-16 87.8 75 53.3
Pp3c13_21820 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.0e-16 87.4 76 53.9
Pp3c6_11870 Physcomitrium patens HOM05D003016 ORTHO05D009718 8.5e-16 86.7 75 50.7
Pp3c6_5920 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.9e-15 85.5 75 52.0
Pp3c6_5930 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.9e-15 85.5 75 52.0
Pp3c2_12940 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.5e-15 84.0 75 49.3
Pp3c9_16390 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.2e-14 82.8 75 46.7
Pp3c11_3290 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.6e-14 82.4 74 52.7
Pp3c7_21890 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.6e-14 82.4 75 52.0
Pp3c8_13790 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.6e-14 82.4 76 48.7
Pp3c8_2030 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.1e-14 82.0 66 54.5
Pp3c14_13240 Physcomitrium patens HOM05D003016 ORTHO05D009718 4.7e-14 80.9 76 50.0
Pp3c12_3820 Physcomitrium patens HOM05D003016 ORTHO05D009718 8.0e-14 80.1 75 50.7
Pp3c20_20770 Physcomitrium patens HOM05D003016 ORTHO05D009718 6.8e-13 77.0 75 46.7
Pp3c20_15850 Physcomitrium patens HOM05D003016 ORTHO05D000239 8.8e-13 76.6 76 48.7
Pp3c20_21220 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.7e-12 73.9 75 46.7
Pp3c18_2410 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.7e-11 71.2 61 52.5
Pp3c3_15550 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.7e-11 71.2 56 60.7
Pp3c21_18290 Physcomitrium patens HOM05D003016 ORTHO05D009718 1.4e-10 69.3 40 80.0
Pp3c13_21810 Physcomitrium patens HOM05D003016 ORTHO05D000239 2.4e-10 68.6 46 65.2
Pp3c14_6772 Physcomitrium patens HOM05D002195 ORTHO05D009718 3.1e-10 68.2 76 46.1
Pp3c4_21040 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.3e-10 67.4 72 45.8
Pp3c6_20100 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.3e-10 67.4 63 47.6
Pp3c3_21800 Physcomitrium patens HOM05D003016 ORTHO05D314314 9.1e-10 66.6 45 64.4
Pp3c13_1691 Physcomitrium patens HOM05D002195 ORTHO05D002762 2.0e-09 65.5 76 42.1
Pp3c21_8750 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.0e-09 65.5 75 48.0
Pp3c3_30890 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.0e-09 65.5 57 50.9
Pp3c9_9314 Physcomitrium patens HOM05D003016 ORTHO05D009718 2.0e-09 65.5 68 47.1
Pp3c13_19890 Physcomitrium patens HOM05D003016 ORTHO05D009718 3.5e-09 64.7 54 59.3
Pp3c11_24020 Physcomitrium patens HOM05D002195 ORTHO05D002898 5.9e-09 63.9 72 48.6
Pp3c5_15380 Physcomitrium patens HOM05D002195 ORTHO05D002762 1.0e-08 63.2 76 42.1
Pp3c10_20260 Physcomitrium patens HOM05D002195 ORTHO05D002898 1.3e-08 62.8 73 43.8
Pp3c13_1180 Physcomitrium patens HOM05D002195 ORTHO05D002762 1.3e-08 62.8 76 40.8
Pp3c14_400 Physcomitrium patens HOM05D002195 ORTHO05D019346 1.3e-08 62.8 72 44.4
Pp3c13_1240 Physcomitrium patens HOM05D002195 ORTHO05D002762 1.7e-08 62.4 76 40.8
CBR_g48028 Chara braunii HOM05D000239 ORTHO05D000484 3.8e-08 61.2 78 37.2
Pp3c11_6870 Physcomitrium patens HOM05D000041 ORTHO05D002762 5.0e-08 60.8 77 40.3
Pp3c4_11670 Physcomitrium patens HOM05D002195 ORTHO05D002898 5.0e-08 60.8 75 38.7
Pp3c14_8120 Physcomitrium patens HOM05D003016 ORTHO05D000239 1.1e-07 59.7 74 43.2
Pp3c1_30900 Physcomitrium patens HOM05D002195 ORTHO05D002762 1.9e-07 58.9 77 40.3
Pp3c21_1520 Physcomitrium patens HOM05D002195 ORTHO05D013705 1.9e-07 58.9 82 37.8
SEGI_01971 Sequoiadendron giganteum HOM05D002195 ORTHO05D013705 2.5e-07 58.5 71 35.2
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 3.2e-07 58.2 75 41.3
A09p14830 Brassica napus HOM05D002195 ORTHO05D002898 3.2e-07 58.2 75 41.3
BraA09t37074Z Brassica rapa HOM05D002195 ORTHO05D002898 3.2e-07 58.2 75 41.3
BraA09t37129Z Brassica rapa HOM05D002195 ORTHO05D002898 3.2e-07 58.2 75 41.3
SEGI_29443 Sequoiadendron giganteum HOM05D002195 ORTHO05D013705 3.2e-07 58.2 71 35.2
MSTRG.25656 Avicennia marina HOM05D002195 ORTHO05D002898 4.2e-07 57.8 75 38.7
Mapoly0063s0093 Marchantia polymorpha HOM05D000239 ORTHO05D036691 5.5e-07 57.4 78 34.6
Pp3c10_2950 Physcomitrium patens HOM05D002195 ORTHO05D002898 5.5e-07 57.4 73 37.0
Pp3c18_9170 Physcomitrium patens HOM05D002195 ORTHO05D019346 5.5e-07 57.4 75 37.3
Pp3c7_21110 Physcomitrium patens HOM05D003016 ORTHO05D000239 5.5e-07 57.4 46 52.2
Pp3c8_14413 Physcomitrium patens HOM05D003016 ORTHO05D009718 5.5e-07 57.4 61 45.9
BcaB07g31450 Brassica carinata HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 40.0
BcaB07g31513 Brassica carinata HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 40.0
BcaC04g22553 Brassica carinata HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 40.0
BcaC04g22633 Brassica carinata HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 40.0
C09p17950 Brassica napus HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 40.0
BolC9t54692H Brassica oleracea HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 40.0
CDE04G3413 Ceratophyllum demersum HOM05D002195 ORTHO05D002898 7.2e-07 57.0 75 37.3
Migut.A00684 Erythranthe guttata HOM05D002195 ORTHO05D002898 9.4e-07 56.6 75 37.3
THA.LOC104817677 Tarenaya hassleriana HOM05D002195 ORTHO05D002898 9.4e-07 56.6 75 38.7
AL2G10640 Arabidopsis lyrata HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 38.7
AT1G64300 Arabidopsis thaliana HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 38.7
CARHR046660 Cardamine hirsuta HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 38.7
CDE02G3525 Ceratophyllum demersum HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 37.3
Peaxi162Scf00102g01734 Petunia axillaris HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 34.7
Sp7g00360 Schrenkiella parvula HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 38.7
THA.LOC104823608 Tarenaya hassleriana HOM05D002195 ORTHO05D002898 1.2e-06 56.2 75 37.3
C04p48960 Brassica napus HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 38.7
BolC4t26477H Brassica oleracea HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 38.7
CAN.G532.92 Capsicum annuum HOM05D002195 ORTHO05D002898 1.6e-06 55.8 74 37.8
Nitab4.5_0002944g0190 Nicotiana tabacum HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 34.7
Nitab4.5_0006656g0020 Nicotiana tabacum HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 34.7
Pp3c13_16480 Physcomitrium patens HOM05D002195 ORTHO05D316968 1.6e-06 55.8 73 35.6
Pp3c25_13600 Physcomitrium patens HOM05D002195 ORTHO05D023075 1.6e-06 55.8 70 44.3
Solyc08g008240.3 Solanum lycopersicum HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 34.7
Sopen08g004090 Solanum pennellii HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 34.7
PGSC0003DMG400005785 Solanum tuberosum HOM05D002195 ORTHO05D002898 1.6e-06 55.8 75 34.7
BraA04t17128Z Brassica rapa HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 38.7
Carub.0002s0051 Capsella rubella HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 38.7
Carub.0007s3373 Capsella rubella HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 38.7
Thhalv10023305m.g Eutrema salsugineum HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 37.3
MBI07_g20447_MAGBIO Magnolia biondii HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 36.0
Pp3c10_15760 Physcomitrium patens HOM05D002195 ORTHO05D314868 2.1e-06 55.5 77 40.3
Pp3c10_15840 Physcomitrium patens HOM05D002195 ORTHO05D319041 2.1e-06 55.5 77 40.3
Rhsim07G0006500 Rhododendron simsii HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 37.3
Sp2g00460 Schrenkiella parvula HOM05D002195 ORTHO05D002898 2.1e-06 55.5 75 38.7
Nitab4.5_0000223g0110 Nicotiana tabacum HOM05D002195 ORTHO05D002898 2.7e-06 55.1 74 36.5
HPP92_009161 Vanilla planifolia HOM05D002195 ORTHO05D002898 2.7e-06 55.1 75 37.3
CARHR272940 Cardamine hirsuta HOM05D002195 ORTHO05D002898 3.6e-06 54.7 75 37.3
Cpa.g.sc122.29 Carica papaya HOM05D002195 ORTHO05D002898 3.6e-06 54.7 75 37.3
Thhalv10027660m.g Eutrema salsugineum HOM05D002195 ORTHO05D002898 3.6e-06 54.7 75 37.3
Thhalv10029146m.g Eutrema salsugineum HOM05D002195 ORTHO05D002898 3.6e-06 54.7 75 37.3
SEGI_16631 Sequoiadendron giganteum HOM05D000033 ORTHO05D013705 3.6e-06 54.7 72 37.5
HPP92_008644 Vanilla planifolia HOM05D002195 ORTHO05D002898 3.6e-06 54.7 76 38.2
HPP92_008768 Vanilla planifolia HOM05D002195 ORTHO05D002898 3.6e-06 54.7 76 38.2
AL7G47610 Arabidopsis lyrata HOM05D002195 ORTHO05D002898 4.7e-06 54.3 75 38.7
AT5G41730 Arabidopsis thaliana HOM05D002195 ORTHO05D002898 4.7e-06 54.3 75 38.7
Nitab4.5_0004161g0110 Nicotiana tabacum HOM05D002195 ORTHO05D002898 4.7e-06 54.3 74 36.5
Peaxi162Scf00074g01220 Petunia axillaris HOM05D002195 ORTHO05D002898 4.7e-06 54.3 74 36.5
Pp3c1_17930 Physcomitrium patens HOM05D000005 ORTHO05D000239 4.7e-06 54.3 74 39.2
A04p14900 Brassica napus HOM05D002195 ORTHO05D002898 6.1e-06 53.9 75 37.3
SMO351G0416 Selaginella moellendorffii HOM05D002195 ORTHO05D010934 6.1e-06 53.9 76 40.8
SMO351G0622 Selaginella moellendorffii HOM05D002195 ORTHO05D010934 6.1e-06 53.9 76 40.8
Aa31LG2G1290 Aethionema arabicum HOM05D002195 ORTHO05D002898 8.0e-06 53.5 75 38.7
Pp3c17_8740 Physcomitrium patens HOM05D003016 ORTHO05D311394 8.0e-06 53.5 66 40.9
Pp3c19_11710 Physcomitrium patens HOM05D002195 ORTHO05D311946 8.0e-06 53.5 75 41.3
SMO115G0218 Selaginella moellendorffii HOM05D000088 ORTHO05D002898 8.0e-06 53.5 72 40.3
GSVIVG01027053001 Vitis vinifera HOM05D002195 ORTHO05D002898 8.0e-06 53.5 75 36.0


User provided reference genes

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