Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.2e-253 879.4 452 100.0
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 6.5e-111 405.2 444 50.7
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 5.5e-94 349.0 439 45.3
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.0e-92 344.7 404 46.8
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.5e-91 340.9 376 44.9
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 5.7e-91 339.0 424 46.2
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 7.5e-91 338.6 428 43.5
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 9.8e-91 338.2 400 45.8
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.3e-90 337.8 421 44.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 3.7e-90 336.3 386 46.6
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 6.3e-90 335.5 397 45.3
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 6.3e-90 335.5 379 45.9
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.1e-89 334.7 397 45.1
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.1e-89 334.7 388 45.9
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.4e-89 333.6 423 43.5
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.2e-89 331.6 443 44.0
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 9.2e-89 331.6 434 42.4
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.2e-88 331.3 386 46.1
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.5e-88 329.7 424 45.5
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.3e-87 327.8 423 43.0
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 1.3e-87 327.8 432 44.9
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.3e-87 327.8 439 42.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.3e-87 327.0 417 43.9
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 2.3e-87 327.0 375 45.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.3e-87 327.0 428 43.7
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 2.9e-87 326.6 382 45.8
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 2.9e-87 326.6 432 44.9
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 5.0e-87 325.9 377 44.8
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.6e-87 325.5 443 44.0
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.6e-87 325.5 437 43.0
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 6.6e-87 325.5 395 44.3
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 6.6e-87 325.5 382 45.0
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 8.6e-87 325.1 421 43.7
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.5e-86 324.3 407 45.0
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 1.5e-86 324.3 450 42.7
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.9e-86 323.9 469 39.7
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.9e-86 323.9 433 40.6
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.5e-86 323.6 432 43.3
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.3e-86 323.2 473 41.2
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 5.6e-86 322.4 375 46.1
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 7.3e-86 322.0 419 43.4
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 7.3e-86 322.0 378 46.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 7.3e-86 322.0 430 43.5
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 9.5e-86 321.6 419 43.2
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 9.5e-86 321.6 422 43.4
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 9.5e-86 321.6 359 46.0
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 9.5e-86 321.6 386 45.1
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.2e-85 321.2 404 43.1
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.2e-85 321.2 379 45.4
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.6e-85 320.9 421 43.7
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.1e-85 320.5 432 42.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 3.6e-85 319.7 464 42.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 3.6e-85 319.7 411 43.1
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 3.6e-85 319.7 422 41.7
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 4.7e-85 319.3 437 42.8
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 4.7e-85 319.3 428 42.8
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 8.0e-85 318.5 376 43.6
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 8.0e-85 318.5 422 42.4
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 8.0e-85 318.5 445 41.8
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.0e-84 318.2 391 44.8
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.0e-84 318.2 391 45.0
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.0e-84 318.2 425 43.5
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.4e-84 317.8 424 43.6
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 2.3e-84 317.0 360 45.8
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 2.3e-84 317.0 431 43.4
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.1e-84 316.6 362 45.6
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.1e-84 316.6 430 41.6
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 3.1e-84 316.6 425 42.8
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 5.2e-84 315.8 439 42.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.2e-84 315.8 434 41.0
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 8.9e-84 315.1 448 42.6
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 1.2e-83 314.7 400 43.5
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.5e-83 314.3 392 44.6
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.4e-83 313.2 421 41.1
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 5.8e-83 312.4 425 42.1
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 7.5e-83 312.0 430 42.3
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 7.5e-83 312.0 450 40.9
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 7.5e-83 312.0 375 45.9
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 7.5e-83 312.0 421 40.9
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.3e-82 311.2 428 43.0
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.3e-82 311.2 381 45.1
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 2.9e-82 310.1 468 40.4
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.7e-82 309.7 422 41.2
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.9e-82 309.3 422 41.0
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 4.9e-82 309.3 375 44.8
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 6.4e-82 308.9 375 45.6
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.9e-81 307.4 443 42.0
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-81 307.0 379 45.1
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 5.4e-81 305.8 416 42.8
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 9.2e-81 305.1 378 45.0
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.2e-80 304.7 378 45.2
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 1.6e-80 304.3 360 43.9
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 2.0e-80 303.9 375 44.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 6.0e-80 302.4 377 44.8
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 6.0e-80 302.4 377 44.8
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 6.0e-80 302.4 463 40.8
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 7.8e-80 302.0 377 44.8
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 2.3e-79 300.4 428 39.7
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.0e-79 300.1 427 41.5
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.5e-78 297.7 376 44.1
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.9e-78 297.4 437 40.5
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.5e-78 297.0 445 40.2
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.5e-78 297.0 445 40.2
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 4.3e-78 296.2 360 44.4
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.5e-78 295.0 425 40.2
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 2.1e-77 293.9 380 43.7
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.1e-77 293.9 465 40.2
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 4.7e-77 292.7 425 41.6
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.1e-76 291.6 398 45.0
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 3.1e-76 290.0 463 39.5
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 4.0e-76 289.7 427 41.5
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 6.8e-76 288.9 470 38.9
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 2.0e-75 287.3 435 39.1
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 4.4e-75 286.2 343 43.1
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 4.9e-74 282.7 489 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.4e-73 281.2 310 46.1
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.0e-73 278.9 426 37.8
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.2e-73 278.5 420 40.7
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 3.6e-69 266.5 339 41.6
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.0e-68 263.1 460 37.8
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 5.8e-67 259.2 394 39.8
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.3e-66 258.1 312 43.6
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-66 257.7 479 37.8
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 4.9e-66 256.1 309 44.7
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 7.1e-65 252.3 308 43.2
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 7.1e-65 252.3 420 37.4
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.6e-64 251.1 314 43.3
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.7e-64 250.4 435 37.9
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.0e-63 246.9 464 38.1
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.1e-62 245.0 308 42.2
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 3.3e-62 243.4 475 35.8
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 2.9e-58 230.3 313 41.9
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-55 221.1 310 41.0
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.1e-52 211.8 417 35.0
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 2.6e-51 207.2 199 51.3
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.2e-43 181.8 251 41.4
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 8.7e-39 165.6 424 32.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.8e-37 160.6 129 51.9
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.6e-35 154.1 232 39.7
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.2e-33 146.7 167 48.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-32 145.2 385 29.1
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-32 145.2 385 29.1
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 3.5e-32 143.7 402 27.9
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 4.0e-28 130.2 363 28.1
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.1e-24 116.3 133 42.9
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.7e-23 112.5 255 31.8
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 7.4e-22 109.4 344 27.3
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 9.7e-22 109.0 254 29.9
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.6e-11 74.3 51 62.7
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 2.1e-08 64.7 80 43.8
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 2.1e-08 64.7 80 43.8
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.8e-07 61.6 77 45.5
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.1e-06 58.9 47 55.3


User provided reference genes

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