Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 6.0e-261 903.7 463 100.0
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 7.5e-179 630.9 390 76.2
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 2.0e-176 622.9 386 78.2
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 2.0e-176 622.9 443 70.4
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 3.5e-176 622.1 443 70.0
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.7e-176 620.9 388 77.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.9e-175 619.0 378 78.0
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.9e-175 619.0 385 78.4
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.9e-175 619.0 387 77.0
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 8.6e-175 617.5 392 75.0
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.1e-174 617.1 386 75.6
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.1e-174 617.1 387 78.0
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.1e-174 617.1 396 75.0
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.1e-174 617.1 384 77.1
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 2.5e-174 615.9 387 77.8
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.5e-174 615.9 393 74.6
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 4.3e-174 615.1 385 78.2
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 4.3e-174 615.1 384 76.3
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 5.6e-174 614.8 387 77.8
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.6e-174 614.8 392 75.0
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 5.6e-174 614.8 444 70.3
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 9.5e-174 614.0 366 80.9
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 9.5e-174 614.0 386 75.9
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 9.5e-174 614.0 393 74.6
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 9.5e-174 614.0 386 76.9
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.2e-173 613.6 366 79.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.2e-173 613.6 438 69.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.6e-173 613.2 385 76.6
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 2.1e-173 612.8 464 67.5
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.8e-173 612.5 385 77.4
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.8e-173 612.5 385 77.4
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.8e-173 612.5 385 77.4
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.6e-173 612.1 386 75.4
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 4.7e-173 611.7 383 76.5
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 4.7e-173 611.7 383 76.5
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 4.7e-173 611.7 385 77.4
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 4.7e-173 611.7 366 79.0
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.7e-173 611.7 366 78.4
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 4.7e-173 611.7 391 76.0
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 6.1e-173 611.3 439 70.6
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.0e-173 610.9 438 69.6
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 8.0e-173 610.9 381 76.4
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 1.4e-172 610.1 448 69.4
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.4e-172 610.1 386 75.4
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.4e-172 610.1 366 78.7
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.4e-172 610.1 457 68.3
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.8e-172 609.8 450 70.0
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.3e-172 609.4 384 76.3
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 2.3e-172 609.4 382 77.0
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.3e-172 609.4 397 74.3
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 3.0e-172 609.0 367 78.7
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.0e-172 608.6 427 69.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 4.0e-172 608.6 386 76.4
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 4.0e-172 608.6 396 73.0
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 5.2e-172 608.2 376 76.6
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 8.9e-172 607.4 377 76.7
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 8.9e-172 607.4 385 75.3
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.2e-171 607.1 385 75.3
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.5e-171 606.7 452 67.5
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.5e-171 606.7 366 78.1
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.0e-171 606.3 440 70.0
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.0e-171 606.3 410 72.9
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.0e-171 606.3 364 78.8
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.6e-171 605.9 460 67.2
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 2.6e-171 605.9 362 78.5
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 3.4e-171 605.5 366 79.0
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 3.4e-171 605.5 375 77.1
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 4.4e-171 605.1 366 79.2
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 4.4e-171 605.1 412 71.6
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 4.4e-171 605.1 415 73.0
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 4.4e-171 605.1 447 68.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 5.7e-171 604.7 450 68.2
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 5.7e-171 604.7 462 66.9
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 9.8e-171 604.0 441 68.5
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 9.8e-171 604.0 388 74.7
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 2.2e-170 602.8 448 68.8
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 2.9e-170 602.4 463 67.6
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 3.7e-170 602.1 446 67.9
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 3.7e-170 602.1 398 73.1
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 3.7e-170 602.1 376 75.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 4.9e-170 601.7 385 74.8
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 4.9e-170 601.7 455 69.0
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 4.9e-170 601.7 388 74.5
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.8e-169 599.7 456 66.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.8e-169 599.7 403 72.7
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.8e-169 599.7 467 66.8
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 2.4e-169 599.4 376 75.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 3.2e-169 599.0 461 66.8
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.1e-169 598.6 387 75.7
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 7.0e-169 597.8 366 76.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 9.2e-169 597.4 384 74.7
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 9.2e-169 597.4 444 68.7
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.0e-168 596.3 446 67.9
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 4.6e-168 595.1 390 73.6
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 6.6e-167 591.3 466 66.3
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 6.6e-167 591.3 463 66.5
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 8.6e-167 590.9 414 71.3
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 8.6e-167 590.9 420 69.0
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.5e-166 589.3 366 77.6
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.3e-166 589.0 366 76.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 5.6e-166 588.2 443 68.2
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 7.3e-166 587.8 382 72.5
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.1e-165 586.3 451 65.4
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.7e-165 585.1 382 72.3
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-160 570.5 348 77.0
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.7e-160 569.3 414 68.8
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.2e-154 549.7 328 78.7
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 7.8e-152 541.2 393 69.0
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.1e-149 533.1 373 70.0
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 1.2e-147 527.3 409 66.3
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 2.4e-145 519.6 374 65.8
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 7.3e-142 508.1 436 61.7
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.1e-141 506.5 384 65.6
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.1e-140 502.7 371 66.3
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.9e-137 493.4 287 80.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.4e-137 491.9 287 81.2
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.5e-134 483.0 363 64.2
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 3.9e-127 459.1 501 51.3
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.9e-122 443.0 280 76.4
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 7.4e-118 428.3 275 74.5
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 9.6e-118 427.9 253 79.4
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 5.8e-115 418.7 376 57.2
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 6.9e-108 395.2 233 79.4
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.4e-102 375.2 318 60.4
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.7e-98 364.0 224 75.0
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 6.1e-96 355.5 447 47.0
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.1e-84 318.2 256 64.5
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 2.9e-82 310.1 299 51.2
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 7.2e-73 278.9 273 55.7
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 6.8e-71 272.3 246 56.5
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 3.4e-70 270.0 286 50.3
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 4.1e-68 263.1 360 42.5
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.6e-62 243.8 161 72.7
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 3.4e-54 216.9 367 40.1
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.3e-45 185.7 113 77.9
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.6e-43 181.4 184 55.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 2.3e-42 177.6 213 50.7
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 7.3e-41 172.6 240 48.3
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.5e-27 127.1 83 71.1
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.5e-27 127.1 83 71.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 5.2e-23 113.2 77 70.1
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 9.0e-23 112.5 129 48.1
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 9.0e-23 112.5 129 48.1
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.4e-20 103.2 69 72.5
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.5e-17 95.1 65 67.7
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 3.3e-17 94.0 121 44.6
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.6e-14 82.8 73 52.1
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 2.5e-09 67.8 56 62.5


User provided reference genes

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