Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_20520 Physcomitrium patens HOM05D041526 ORTHO05D001271 7.0e-285 983.8 710 100.0
Pp3c3_26310 Physcomitrium patens HOM05D041526 ORTHO05D001271 1.3e-118 431.4 735 63.0
Pp3c3_26300 Physcomitrium patens HOM05D041526 ORTHO05D001271 1.2e-66 258.8 302 70.9
Mapoly0003s0069 Marchantia polymorpha HOM05D005101 ORTHO05D001271 8.3e-36 156.4 528 28.6
RcHm_v2.0_Chr7g0217401 Rosa chinensis HOM05D005101 ORTHO05D001271 3.5e-18 97.8 447 30.4
CBR_g45701 Chara braunii HOM05D002105 ORTHO05D001271 6.0e-18 97.1 313 25.2
Ciclev10000062m.g Citrus clementina HOM05D005101 ORTHO05D001271 3.3e-16 91.3 465 25.4
FAN04G0351 Fragaria x ananassa HOM05D005101 ORTHO05D001271 4.3e-16 90.9 230 33.9
FAN13G2092 Fragaria x ananassa HOM05D005101 ORTHO05D001271 4.3e-16 90.9 231 33.3
FAN18G2527 Fragaria x ananassa HOM05D005101 ORTHO05D001271 4.3e-16 90.9 231 33.3
MD06G1001600 Malus domestica HOM05D005101 ORTHO05D001271 4.3e-16 90.9 497 23.9
FAN08G1478 Fragaria x ananassa HOM05D005101 ORTHO05D001271 5.6e-16 90.5 230 33.0
ATR0605G356 Amborella trichopoda HOM05D005101 ORTHO05D001271 1.2e-15 89.4 538 23.4
Prupe.5G002400 Prunus persica HOM05D005101 ORTHO05D001271 1.6e-15 89.0 535 24.9
QL02p016087 Quercus lobata HOM05D005101 ORTHO05D001271 2.1e-15 88.6 599 22.2
Eucgr.F03616 Eucalyptus grandis HOM05D005101 ORTHO05D001271 2.8e-15 88.2 230 35.7
AT1G20970 Arabidopsis thaliana HOM05D005101 ORTHO05D001271 1.1e-14 86.3 516 22.9
Potri.006G191500 Populus trichocarpa HOM05D005101 ORTHO05D001271 2.3e-14 85.1 605 23.1
PSO541G3235 Papaver somniferum HOM05D005101 ORTHO05D001271 5.2e-14 84.0 97 44.3
AL1G34040 Arabidopsis lyrata HOM05D005101 ORTHO05D001271 6.8e-14 83.6 557 23.0
CiPaw.08G078400 Carya illinoinensis HOM05D005101 ORTHO05D001271 6.8e-14 83.6 527 24.3
Gohir.D05G370650 Gossypium hirsutum HOM05D005101 ORTHO05D001271 1.2e-13 82.8 226 33.2
Gorai.009G439100 Gossypium raimondii HOM05D005101 ORTHO05D001271 1.5e-13 82.4 226 33.2
Lalb_Chr17g0338131 Lupinus albus HOM05D005101 ORTHO05D001271 1.5e-13 82.4 243 32.5
arahy.Tifrunner.gnm1.ann1.CZE161 Arachis hypogaea HOM05D005101 ORTHO05D001271 2.0e-13 82.0 192 33.9
PSO675G4128 Papaver somniferum HOM05D005101 ORTHO05D001271 2.0e-13 82.0 97 44.3
TWI36G1399 Tripterygium wilfordii HOM05D005101 ORTHO05D001271 2.6e-13 81.6 545 24.4
Thecc.07G035700 Theobroma cacao HOM05D005101 ORTHO05D001271 5.8e-13 80.5 460 23.9
SMO367G1162 Selaginella moellendorffii HOM05D002105 ORTHO05D001271 7.5e-13 80.1 196 35.7
TWI56G0322 Tripterygium wilfordii HOM05D005101 ORTHO05D001271 7.5e-13 80.1 579 22.5
ECA233G5568 Erigeron canadensis HOM05D005101 ORTHO05D001271 1.7e-12 79.0 464 23.1
Gohir.A04G015650 Gossypium hirsutum HOM05D005101 ORTHO05D001271 2.2e-12 78.6 220 30.9
CDE10G0907 Ceratophyllum demersum HOM05D005101 ORTHO05D001271 3.7e-12 77.8 94 42.6
THA.LOC104813728 Tarenaya hassleriana HOM05D005101 ORTHO05D001271 3.7e-12 77.8 418 23.2
FvH4_5g26490 Fragaria vesca HOM05D005101 ORTHO05D001271 4.9e-12 77.4 234 31.6
Lalb_Chr10g0095281 Lupinus albus HOM05D005101 ORTHO05D001271 6.4e-12 77.0 219 34.2
CDE10G1114 Ceratophyllum demersum HOM05D005101 ORTHO05D001271 8.3e-12 76.6 199 33.7
arahy.Tifrunner.gnm1.ann1.DXQU4L Arachis hypogaea HOM05D005101 ORTHO05D001271 1.1e-11 76.3 199 31.7
Gohir.A01G080000 Gossypium hirsutum HOM05D005101 ORTHO05D001271 1.1e-11 76.3 315 22.5
Oeu064738.2 Olea europaea HOM05D005101 ORTHO05D001271 1.1e-11 76.3 548 24.8
A06p17010 Brassica napus HOM05D005101 ORTHO05D001271 1.4e-11 75.9 590 21.9
BraA06t24808Z Brassica rapa HOM05D005101 ORTHO05D001271 1.4e-11 75.9 590 21.9
Cpa.g.sc36.107 Carica papaya HOM05D005101 ORTHO05D001271 1.4e-11 75.9 593 23.8
Gohir.D01G067200 Gossypium hirsutum HOM05D005101 ORTHO05D001271 1.4e-11 75.9 459 21.8
EL10Ac5g12200 Beta vulgaris HOM05D005101 ORTHO05D001271 1.9e-11 75.5 239 30.5
C05p19640 Brassica napus HOM05D005101 ORTHO05D001271 1.9e-11 75.5 599 22.5
CiPaw.07G130900 Carya illinoinensis HOM05D005101 ORTHO05D001271 1.9e-11 75.5 570 24.2
Dinv05511 Davidia involucrata HOM05D005101 ORTHO05D001271 1.9e-11 75.5 176 30.1
Aqoxy6G03044 Aquilegia oxysepala HOM05D005101 ORTHO05D001271 2.4e-11 75.1 245 31.0
BcaC05g26005 Brassica carinata HOM05D005101 ORTHO05D001271 2.4e-11 75.1 600 22.3
BolC5t30665H Brassica oleracea HOM05D005101 ORTHO05D001271 2.4e-11 75.1 600 22.3
DCAR_013950 Daucus carota HOM05D005101 ORTHO05D001271 2.4e-11 75.1 246 30.5
Gorai.002G089100 Gossypium raimondii HOM05D005101 ORTHO05D001271 3.2e-11 74.7 234 29.1
Gohir.D05G370550 Gossypium hirsutum HOM05D005101 ORTHO05D001271 4.1e-11 74.3 102 38.2
Manes.05G129900 Manihot esculenta HOM05D005101 ORTHO05D001271 4.1e-11 74.3 237 29.5
Haze_22881 Corylus avellana HOM05D005101 ORTHO05D001271 5.4e-11 73.9 574 25.6
GSVIVG01013451001 Vitis vinifera HOM05D005101 ORTHO05D001271 5.4e-11 73.9 469 24.7
Aa31LG7G5150 Aethionema arabicum HOM05D005101 ORTHO05D001271 7.1e-11 73.6 595 23.2
BcaB07g32090 Brassica carinata HOM05D005101 ORTHO05D001271 7.1e-11 73.6 604 22.7
Peaxi162Scf00205g01431 Petunia axillaris HOM05D005101 ORTHO05D001271 7.1e-11 73.6 449 24.3
Sabra06G0146700 Salix brachista HOM05D005101 ORTHO05D001271 2.1e-10 72.0 505 20.6
SalBow7G2128 Salvia bowleyana HOM05D005101 ORTHO05D001271 2.1e-10 72.0 224 30.4
CARHR021430 Cardamine hirsuta HOM05D005101 ORTHO05D001271 2.7e-10 71.6 477 22.4
Duzib268G0010 Durio zibethinus HOM05D005101 ORTHO05D001271 2.7e-10 71.6 553 21.9
Oeu030369.3 Olea europaea HOM05D005101 ORTHO05D001271 2.7e-10 71.6 448 23.4
TAR376G0758 Trochodendron aralioides HOM05D005101 ORTHO05D001271 2.7e-10 71.6 233 30.0
Atru.chr13.27 Acer truncatum HOM05D005101 ORTHO05D001271 3.5e-10 71.2 479 22.8
MBI04_g11526_MAGBIO Magnolia biondii HOM05D005101 ORTHO05D001271 3.5e-10 71.2 249 34.5
Cfa014159 Carpinus fangiana HOM05D005101 ORTHO05D001271 4.6e-10 70.9 558 25.1
SGA_v2.0_scaffold26G11270 Striga asiatica HOM05D005101 ORTHO05D001271 4.6e-10 70.9 515 23.1
unitig_8.g4908 Utricularia gibba HOM05D005101 ORTHO05D001271 7.8e-10 70.1 96 41.7
Ah.07g200000 Amaranthus hybridus HOM05D005101 ORTHO05D001271 1.0e-09 69.7 183 30.1
Ah.12g053660 Amaranthus hybridus HOM05D005101 ORTHO05D001271 1.0e-09 69.7 292 28.4
Cc10_g00130 Coffea canephora HOM05D005101 ORTHO05D001271 1.0e-09 69.7 467 23.6
Oeu059862.1 Olea europaea HOM05D005101 ORTHO05D001271 1.0e-09 69.7 470 24.3
Actinidia37901 Actinidia chinensis HOM05D005101 ORTHO05D001271 1.3e-09 69.3 98 39.8
CsaV3_4G037750 Cucumis sativus L. HOM05D005101 ORTHO05D001271 1.3e-09 69.3 233 30.9
Gorai.009G438800 Gossypium raimondii HOM05D005101 ORTHO05D001271 1.3e-09 69.3 193 31.1
Psat6g132160 Pisum sativum HOM05D005101 ORTHO05D001271 1.3e-09 69.3 174 30.5
TPR.G22374 Trifolium pratense HOM05D005101 ORTHO05D001271 1.3e-09 69.3 173 30.6
VMungo1215G2445 Vigna mungo HOM05D005101 ORTHO05D001271 1.7e-09 68.9 237 30.0
Carub.0001s2044 Capsella rubella HOM05D005101 ORTHO05D001271 2.3e-09 68.6 583 22.3
AUR62007227 Chenopodium quinoa HOM05D005101 ORTHO05D001271 2.3e-09 68.6 185 31.4
Ca_25723_v3 Cicer arietinum L. HOM05D005101 ORTHO05D001271 2.3e-09 68.6 187 28.3
Dinv23351 Davidia involucrata HOM05D005101 ORTHO05D001271 2.3e-09 68.6 453 24.1
Lsat_1_v5_gn_8_25240 Lactuca sativa HOM05D005101 ORTHO05D001271 2.3e-09 68.6 519 22.7
HPP92_015728 Vanilla planifolia HOM05D005101 ORTHO05D001271 2.3e-09 68.6 525 23.0
Nn5g31073 Nelumbo nucifera HOM05D005101 ORTHO05D001271 3.9e-09 67.8 419 22.7
Sed0027880 Sechium edule HOM05D005101 ORTHO05D001271 5.1e-09 67.4 92 38.0
Sc22g0001420 Simmondsia chinensis HOM05D005101 ORTHO05D001271 5.1e-09 67.4 470 24.0
Sopen05g004540 Solanum pennellii HOM05D005101 ORTHO05D001271 6.6e-09 67.0 404 22.3
MSTRG.24898 Avicennia marina HOM05D005101 ORTHO05D001271 8.6e-09 66.6 233 31.8
HanXRQChr08g0216541 Helianthus annuus HOM05D005101 ORTHO05D001271 1.1e-08 66.2 230 30.9
Migut.C00341 Erythranthe guttata HOM05D005101 ORTHO05D001271 1.5e-08 65.9 576 24.3
Lj2g0011718 Lotus japonicus HOM05D005101 ORTHO05D001271 1.5e-08 65.9 194 29.9
MELO3C017068.2 Cucumis melo HOM05D005101 ORTHO05D001271 2.5e-08 65.1 238 30.3
Lj4C813T13 Lonicera japonica HOM05D005101 ORTHO05D001271 4.3e-08 64.3 389 22.1
CANSAT64G2160 Cannabis sativa HOM05D005101 ORTHO05D001271 5.6e-08 63.9 567 22.6
PSO541G4007 Papaver somniferum HOM05D002105 ORTHO05D001271 9.5e-08 63.2 440 27.3
unitig_32.g11138 Utricularia gibba HOM05D005101 ORTHO05D001271 1.2e-07 62.8 207 30.9
Glyma.20G006500 Glycine max HOM05D005101 ORTHO05D001271 1.6e-07 62.4 213 30.0
Hma1.2p1_0914F.1_g236180 Hydrangea macrophylla HOM05D005101 ORTHO05D001271 2.1e-07 62.0 329 22.5
Phvul.003G008900 Phaseolus vulgaris HOM05D005101 ORTHO05D001271 2.1e-07 62.0 238 29.4
Rhsim07G0258200 Rhododendron simsii HOM05D005101 ORTHO05D001271 2.1e-07 62.0 236 30.1
THA.LOC104812021 Tarenaya hassleriana HOM05D005101 ORTHO05D001271 2.1e-07 62.0 482 21.4
CSS0024940 Camellia sinensis var. sinensis HOM05D005101 ORTHO05D001271 2.8e-07 61.6 459 22.7
Glyma.07G159600 Glycine max HOM05D005101 ORTHO05D001271 2.8e-07 61.6 205 32.2
TAR628G1111 Trochodendron aralioides HOM05D005101 ORTHO05D001271 2.8e-07 61.6 516 21.3
Gohir.A04G016175 Gossypium hirsutum HOM05D005101 ORTHO05D001271 3.6e-07 61.2 98 35.7
Zm00001eb102050 Zea mays HOM05D005101 ORTHO05D001271 4.7e-07 60.8 198 28.8
AT4G27500 Arabidopsis thaliana HOM05D002105 ORTHO05D001271 6.2e-07 60.5 436 23.6
Migut.C00640 Erythranthe guttata HOM05D005101 ORTHO05D001271 6.2e-07 60.5 576 23.4
HanXRQChr07g0204251 Helianthus annuus HOM05D005101 ORTHO05D001271 6.2e-07 60.5 490 21.8
Sp1g18670 Schrenkiella parvula HOM05D005101 ORTHO05D001271 6.2e-07 60.5 510 22.2
SEGI_21183 Sequoiadendron giganteum HOM05D002105 ORTHO05D001271 8.1e-07 60.1 479 23.8
SEGI_30217 Sequoiadendron giganteum HOM05D002105 ORTHO05D001271 8.1e-07 60.1 479 23.8
AUR62018772 Chenopodium quinoa HOM05D005101 ORTHO05D001271 1.8e-06 58.9 464 23.5
Lalb_Chr04g0258871 Lupinus albus HOM05D005101 ORTHO05D001271 1.8e-06 58.9 470 21.9
Carub.0007s1335 Capsella rubella HOM05D002105 ORTHO05D001271 2.4e-06 58.5 464 27.6
unitig_578.g16098 Utricularia gibba HOM05D005101 ORTHO05D001271 2.4e-06 58.5 216 30.1
CiPaw.12G118700 Carya illinoinensis HOM05D002105 ORTHO05D001271 5.2e-06 57.4 442 21.3
Gohir.A04G030600 Gossypium hirsutum HOM05D002105 ORTHO05D001271 6.8e-06 57.0 443 21.2
Aqoxy1G02397 Aquilegia oxysepala HOM05D002105 ORTHO05D001271 8.9e-06 56.6 441 30.6
Manes.03G109600 Manihot esculenta HOM05D002105 ORTHO05D001271 8.9e-06 56.6 301 30.9
PSO675G3374 Papaver somniferum HOM05D002105 ORTHO05D001271 8.9e-06 56.6 440 26.8


User provided reference genes

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