Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 3.5e-55 218.0 106 100.0
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 2.6e-10 68.9 61 47.5
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 1.7e-09 66.2 57 47.4
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.7e-09 66.2 57 50.9
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.7e-09 66.2 57 50.9
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 2.9e-09 65.5 57 49.1
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 2.9e-09 65.5 57 49.1
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 3.8e-09 65.1 57 47.4
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 3.8e-09 65.1 57 45.6
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 3.8e-09 65.1 57 47.4
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 3.8e-09 65.1 57 49.1
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 3.8e-09 65.1 57 49.1
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 4.9e-09 64.7 58 46.6
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 6.4e-09 64.3 57 47.4
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 6.4e-09 64.3 57 49.1
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 6.4e-09 64.3 61 45.9
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 6.4e-09 64.3 64 39.1
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 8.4e-09 63.9 57 49.1
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 8.4e-09 63.9 57 49.1
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 8.4e-09 63.9 57 47.4
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 8.4e-09 63.9 57 47.4
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 8.4e-09 63.9 57 47.4
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 8.4e-09 63.9 57 49.1
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 47.4
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 47.4
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 1.1e-08 63.5 57 45.6
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 1.4e-08 63.2 57 49.1
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 1.4e-08 63.2 57 49.1
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 1.4e-08 63.2 57 47.4
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.4e-08 63.2 57 43.9
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 1.4e-08 63.2 57 47.4
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 1.9e-08 62.8 57 45.6
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 1.9e-08 62.8 57 49.1
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 1.9e-08 62.8 57 47.4
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 1.9e-08 62.8 58 44.8
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 1.9e-08 62.8 58 44.8
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 2.4e-08 62.4 57 45.6
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 2.4e-08 62.4 62 41.9
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 2.4e-08 62.4 62 41.9
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 2.4e-08 62.4 62 41.9
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 3.2e-08 62.0 57 45.6
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 3.2e-08 62.0 57 43.9
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 3.2e-08 62.0 57 45.6
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 3.2e-08 62.0 62 43.5
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 3.2e-08 62.0 57 45.6
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 3.2e-08 62.0 74 39.2
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 4.1e-08 61.6 57 43.9
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 4.1e-08 61.6 57 43.9
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 4.1e-08 61.6 62 43.5
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 45.6
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 43.9
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 5.4e-08 61.2 69 39.1
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 45.6
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 47.4
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 5.4e-08 61.2 61 41.0
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 5.4e-08 61.2 62 41.9
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 43.9
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 43.9
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 43.9
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 45.6
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 5.4e-08 61.2 57 45.6
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 43.9
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 45.6
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 45.6
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 64 39.1
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 43.9
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 38.6
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 38.6
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 45.6
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 45.6
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 43.9
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 45.6
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 43.9
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 7.1e-08 60.8 57 45.6
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 9.2e-08 60.5 57 45.6
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.2e-08 60.5 57 45.6
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.2e-08 60.5 57 45.6
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.2e-08 60.5 57 45.6
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.2e-08 60.5 57 45.6
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 9.2e-08 60.5 57 45.6
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 9.2e-08 60.5 47 57.4
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 9.2e-08 60.5 62 40.3
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 1.2e-07 60.1 57 43.9
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.2e-07 60.1 57 47.4
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.2e-07 60.1 57 42.1
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.2e-07 60.1 57 42.1
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.2e-07 60.1 57 42.1
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.6e-07 59.7 57 45.6
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 1.6e-07 59.7 57 43.9
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 1.6e-07 59.7 57 42.1
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 1.6e-07 59.7 57 40.4
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.1e-07 59.3 57 43.9
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 2.7e-07 58.9 58 41.4
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 2.7e-07 58.9 58 41.4
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 2.7e-07 58.9 58 41.4
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 2.7e-07 58.9 58 41.4
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 2.7e-07 58.9 58 41.4
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 2.7e-07 58.9 58 41.4
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 3.5e-07 58.5 57 42.1
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 3.5e-07 58.5 57 42.1
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 3.5e-07 58.5 57 43.9
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 3.5e-07 58.5 57 42.1
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 3.5e-07 58.5 57 42.1
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 4.6e-07 58.2 57 42.1
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 6.0e-07 57.8 57 40.4
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 6.0e-07 57.8 57 40.4
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 6.0e-07 57.8 57 40.4
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 6.0e-07 57.8 61 37.7
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 6.0e-07 57.8 61 39.3
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 6.0e-07 57.8 57 45.6
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 6.0e-07 57.8 57 40.4
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 7.8e-07 57.4 57 42.1
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 7.8e-07 57.4 57 45.6
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 7.8e-07 57.4 57 38.6
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 7.8e-07 57.4 57 43.9
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 7.8e-07 57.4 57 42.1
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.0e-06 57.0 40 55.0
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 1.0e-06 57.0 57 43.9
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 1.7e-06 56.2 57 43.9
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 1.7e-06 56.2 57 42.1
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 2.3e-06 55.8 55 41.8
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 2.3e-06 55.8 43 51.2
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.9e-06 55.1 57 42.1
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 3.9e-06 55.1 57 42.1
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 5.1e-06 54.7 57 43.9
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 5.1e-06 54.7 57 38.6


User provided reference genes

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