Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.7e-160 569.3 302 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.4e-85 320.5 302 53.6
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.4e-85 319.7 273 60.8
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.5e-84 315.8 243 63.8
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 7.5e-79 298.1 289 52.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.0e-76 290.0 302 53.3
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.6e-76 288.9 281 52.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 3.9e-75 285.8 289 51.6
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-74 284.3 289 51.6
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.5e-74 283.9 301 49.8
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.9e-74 283.5 289 51.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 7.3e-74 281.6 289 51.2
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 7.3e-74 281.6 287 50.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 4.7e-73 278.9 289 50.5
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.0e-72 277.7 289 50.2
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-72 276.2 293 49.8
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 6.8e-72 275.0 289 50.5
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.2e-71 274.2 250 56.8
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.5e-71 273.9 290 50.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.6e-71 273.1 289 49.8
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.4e-71 272.3 302 51.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 4.4e-71 272.3 289 49.1
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-70 270.8 289 48.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.9e-70 269.6 289 49.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.9e-70 269.6 289 49.5
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 8.3e-70 268.1 289 48.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 8.3e-70 268.1 289 49.5
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.1e-69 267.7 289 49.8
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.1e-69 267.7 289 49.1
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.4e-69 266.5 289 48.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.2e-69 266.2 292 51.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-68 264.2 289 51.2
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-68 264.2 289 51.2
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-68 264.2 289 51.2
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.2e-68 264.2 291 50.9
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.2e-68 264.2 293 50.2
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.2e-68 264.2 289 49.8
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.2e-68 264.2 287 49.5
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.2e-68 264.2 269 50.6
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.6e-68 263.8 289 49.1
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-68 263.8 269 49.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-68 263.1 289 50.9
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.7e-68 263.1 289 47.1
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.7e-68 263.1 197 59.9
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 3.5e-68 262.7 285 49.5
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.5e-68 262.7 197 59.9
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 6.0e-68 261.9 289 48.4
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 6.0e-68 261.9 290 47.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 7.8e-68 261.5 293 48.1
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 7.8e-68 261.5 289 49.5
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.0e-67 261.2 289 50.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.0e-67 261.2 295 49.2
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.0e-67 261.2 289 46.7
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.0e-67 261.2 295 48.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.3e-67 260.8 289 48.8
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.7e-67 260.4 285 49.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.3e-67 260.0 295 47.8
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.3e-67 260.0 289 45.7
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 3.9e-67 259.2 289 49.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 3.9e-67 259.2 261 51.0
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.9e-67 259.2 197 58.9
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 5.0e-67 258.8 289 46.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.0e-67 258.8 289 47.8
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 6.6e-67 258.5 295 46.8
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 6.6e-67 258.5 295 46.8
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 6.6e-67 258.5 295 46.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 8.6e-67 258.1 295 48.1
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.6e-67 258.1 197 58.9
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.5e-66 257.3 261 50.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.5e-66 257.3 289 47.1
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.9e-66 256.9 291 48.1
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.9e-66 256.9 269 49.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.9e-66 256.9 289 47.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.3e-66 256.1 289 48.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 4.3e-66 255.8 291 47.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 7.3e-66 255.0 289 45.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 9.5e-66 254.6 279 48.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.2e-65 254.2 279 48.4
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.6e-65 253.8 289 47.1
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.6e-65 253.8 289 47.1
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.6e-65 253.8 289 45.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.1e-65 253.4 290 48.3
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.1e-65 253.4 289 46.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.1e-65 253.4 261 49.8
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.8e-65 253.1 210 56.7
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.8e-65 253.1 229 54.1
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.8e-65 253.1 290 47.6
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 2.8e-65 253.1 232 52.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.6e-65 252.7 230 53.0
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 3.6e-65 252.7 289 45.3
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.2e-65 251.9 290 47.2
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.1e-64 251.1 290 45.5
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.4e-64 250.8 290 47.2
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.8e-64 250.4 289 46.4
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.3e-64 250.0 289 45.0
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 2.3e-64 250.0 232 52.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.1e-64 249.6 295 47.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 4.0e-64 249.2 290 46.6
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.0e-64 249.2 285 47.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 8.9e-64 248.1 290 45.9
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 8.9e-64 248.1 290 45.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.2e-63 247.7 289 47.1
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.2e-63 247.7 230 53.5
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.4e-63 245.7 293 46.8
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.4e-63 245.7 289 47.1
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.4e-63 245.7 289 47.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.7e-62 243.8 289 46.0
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.2e-62 243.4 278 46.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.9e-62 243.0 289 45.3
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 8.3e-62 241.5 289 46.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.9e-61 240.4 281 47.0
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.4e-61 238.8 250 48.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 3.5e-60 236.1 314 42.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.6e-60 235.7 289 46.4
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.6e-60 235.7 291 45.4
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 7.8e-60 235.0 229 52.0
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 7.8e-60 235.0 229 49.8
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 8.6e-59 231.5 285 45.6
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-57 227.3 238 47.9
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 2.8e-57 226.5 238 47.9
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.8e-56 223.8 227 48.0
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.5e-55 220.7 304 44.1
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.4e-55 219.5 186 55.4
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 7.6e-55 218.4 284 44.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.7e-54 217.2 197 51.8
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.1e-48 198.0 218 48.6
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.1e-48 198.0 289 39.4
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.7e-44 183.3 218 47.2
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-41 172.6 195 47.2
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.8e-38 162.9 248 40.3
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.4e-37 159.1 200 41.5
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-36 157.5 184 42.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-35 154.8 220 42.7
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.3e-35 153.7 153 47.7
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.3e-34 149.8 233 40.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.6e-34 148.3 139 51.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 6.2e-33 145.6 276 35.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.9e-31 138.3 171 45.0
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.6e-28 131.0 191 40.8
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 4.6e-28 129.4 216 36.1
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.6e-26 121.7 145 45.5
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.2e-23 114.8 83 61.4
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-19 101.3 96 51.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.3e-19 101.3 96 51.0
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.8e-19 100.9 119 45.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 5.7e-18 95.9 91 52.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.6e-17 94.4 76 53.9
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-16 90.1 183 35.0
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-16 89.7 194 33.0
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.2e-14 84.0 63 57.1
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.1e-13 81.6 58 60.3
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-13 81.3 57 61.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.3e-13 78.6 58 58.6
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.9e-11 73.2 66 53.0
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 4.8e-09 66.2 50 56.0
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.2e-09 65.5 46 58.7
Pp3c3_920 Physcomitrium patens HOM05D060598 ORTHO05D319248 2.6e-07 60.5 245 26.9
Pp3c3_930 Physcomitrium patens HOM05D060598 ORTHO05D309899 2.6e-07 60.5 245 26.9


User provided reference genes

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