Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 9.0e-276 953.0 487 100.0
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 9.8e-121 438.0 511 48.9
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.1e-116 424.5 526 46.6
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 5.2e-114 415.6 462 49.6
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.4e-113 412.5 456 50.7
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 3.7e-112 409.5 462 48.7
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 6.4e-112 408.7 463 48.8
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 8.3e-112 408.3 452 49.1
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.4e-111 407.5 453 49.2
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.8e-111 407.1 448 49.6
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 2.4e-111 406.8 465 49.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.1e-111 406.0 463 48.8
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 7.0e-111 405.2 465 49.0
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.2e-110 404.4 458 50.0
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.6e-110 404.1 458 49.1
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 2.0e-110 403.7 465 49.0
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 2.7e-110 403.3 459 49.0
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 3.5e-110 402.9 474 48.9
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 4.6e-110 402.5 446 49.8
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 7.8e-110 401.7 458 48.0
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.0e-109 401.4 442 50.7
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.3e-109 401.0 458 48.9
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 1.3e-109 401.0 455 49.0
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 3.0e-109 399.8 445 49.0
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 3.9e-109 399.4 453 49.2
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 5.0e-109 399.1 459 48.1
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 5.0e-109 399.1 455 48.8
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 6.6e-109 398.7 458 48.0
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 8.6e-109 398.3 461 47.9
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.1e-108 397.9 480 47.3
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.5e-108 396.7 447 49.4
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 2.5e-108 396.7 458 48.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 7.3e-108 395.2 445 49.4
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 9.5e-108 394.8 472 47.9
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.2e-107 394.4 455 48.6
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.2e-107 394.4 490 47.1
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.6e-107 394.0 452 49.3
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 2.8e-107 393.3 450 48.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 2.8e-107 393.3 463 47.5
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 4.7e-107 392.5 443 50.1
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 8.0e-107 391.7 449 48.6
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.0e-106 391.3 461 47.5
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.0e-106 391.3 455 48.4
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 2.3e-106 390.2 453 48.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 4.0e-106 389.4 447 48.5
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 4.0e-106 389.4 445 48.3
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 4.0e-106 389.4 474 46.8
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 6.8e-106 388.7 472 46.4
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 8.9e-106 388.3 447 48.5
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.9e-106 388.3 447 49.0
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 8.9e-106 388.3 442 48.9
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.2e-105 387.9 453 48.3
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.5e-105 387.5 460 47.8
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.6e-105 386.7 449 47.4
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.6e-105 386.7 472 48.3
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.4e-105 386.3 452 46.9
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 3.4e-105 386.3 449 49.4
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 4.4e-105 386.0 467 45.8
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 5.8e-105 385.6 458 48.0
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 5.8e-105 385.6 465 47.7
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.5e-105 385.2 453 46.6
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 9.8e-105 384.8 467 46.3
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.3e-104 384.4 463 47.3
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.7e-104 384.0 452 46.5
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 2.2e-104 383.6 453 46.4
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.9e-104 383.3 449 47.9
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 3.7e-104 382.9 463 47.1
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.7e-104 382.9 447 48.5
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 3.7e-104 382.9 468 46.4
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 4.9e-104 382.5 469 45.4
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 6.4e-104 382.1 450 48.2
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-103 381.3 452 47.1
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.1e-103 381.3 463 47.3
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.4e-103 380.9 464 46.8
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.9e-103 380.6 470 46.2
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 2.4e-103 380.2 487 45.4
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.2e-103 379.8 463 46.4
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 4.1e-103 379.4 449 48.3
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 7.0e-103 378.6 460 46.1
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.2e-102 377.9 453 47.5
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.0e-102 377.1 463 46.0
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.7e-102 376.7 469 45.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 3.5e-102 376.3 460 47.6
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 4.6e-102 375.9 450 46.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 6.0e-102 375.6 479 45.9
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.0e-101 374.8 476 45.6
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.0e-101 374.8 476 45.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.7e-101 374.0 443 47.4
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.7e-101 374.0 433 48.3
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 6.6e-101 372.1 478 47.7
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.6e-101 371.7 460 47.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.9e-100 370.5 505 44.6
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.2e-99 367.9 453 45.9
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 2.1e-99 367.1 449 44.8
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.6e-99 366.3 455 46.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.0e-97 360.5 432 46.1
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.6e-97 360.1 516 42.8
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 3.4e-97 359.8 428 48.1
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 5.8e-97 359.0 464 45.3
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.1e-95 354.8 460 44.8
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.4e-95 352.4 516 41.5
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 6.0e-94 349.0 457 44.6
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.3e-93 347.8 437 46.2
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 4.0e-90 336.3 436 46.1
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 6.8e-90 335.5 356 51.4
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 9.2e-87 325.1 608 37.3
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.2e-86 324.7 390 46.9
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 6.6e-85 318.9 439 43.5
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.9e-84 317.4 443 42.4
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.6e-84 315.1 444 42.1
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 9.6e-84 315.1 388 46.4
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 4.3e-76 289.7 307 52.1
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.2e-71 273.1 284 52.1
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 5.4e-71 272.7 283 51.6
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 5.3e-66 256.1 380 44.2
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.2e-65 255.0 465 37.0
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 6.4e-64 249.2 351 43.9
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.1e-63 248.4 456 36.6
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 6.9e-58 229.2 455 36.0
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 3.0e-53 213.8 496 32.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 5.0e-48 196.4 540 30.2
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.7e-35 154.8 173 46.8
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.5e-28 131.7 264 32.6
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 4.4e-28 130.2 92 66.3
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 5.5e-23 113.2 100 54.0
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.2e-22 112.1 105 61.0
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.0e-17 94.7 233 30.9
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 2.2e-16 91.3 195 35.9
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 2.9e-16 90.9 195 36.4
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 2.7e-14 84.3 182 33.5
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 9.8e-12 75.9 67 53.7
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.7e-11 75.1 94 41.5
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 3.7e-11 73.9 59 57.6
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.8e-11 73.6 107 36.4
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 7.7e-09 66.2 106 40.6
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 5.0e-08 63.5 59 50.8
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 8.6e-08 62.8 108 39.8
Cfa025566 Carpinus fangiana HOM05D004999 ORTHO05D122478 3.3e-07 60.8 510 23.1
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.2e-07 60.5 36 72.2


User provided reference genes

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