Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 6.4e-244 847.0 443 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 4.1e-25 120.2 303 34.0
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 4.5e-24 116.7 365 31.5
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.9e-18 97.4 223 32.3
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.7e-18 97.1 155 38.1
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 8.3e-18 95.9 157 34.4
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.1e-17 95.5 249 32.5
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.4e-17 94.4 224 34.4
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.4e-17 94.4 224 34.4
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.4e-17 94.4 147 35.4
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.4e-17 94.4 147 35.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 4.1e-17 93.6 189 34.4
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 7.0e-17 92.8 252 31.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 7.0e-17 92.8 123 40.7
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 7.0e-17 92.8 101 44.6
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 7.0e-17 92.8 182 34.6
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 9.2e-17 92.4 102 44.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.0e-16 91.3 100 43.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 4.6e-16 90.1 212 32.1
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.6e-16 90.1 102 42.2
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.6e-16 90.1 103 44.7
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 4.6e-16 90.1 177 37.9
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.6e-16 90.1 89 44.9
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 4.6e-16 90.1 235 30.2
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 4.6e-16 90.1 103 42.7
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.9e-16 89.7 163 35.6
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 7.8e-16 89.4 89 48.3
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 7.8e-16 89.4 147 37.4
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.0e-15 89.0 189 28.6
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.0e-15 89.0 220 32.3
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.0e-15 89.0 171 32.7
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.3e-15 88.6 189 31.2
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.3e-15 88.6 150 38.7
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.3e-15 88.6 147 37.4
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.3e-15 88.6 117 39.3
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.7e-15 88.2 186 32.8
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.7e-15 88.2 186 32.3
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-15 88.2 89 46.1
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.7e-15 88.2 218 30.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.7e-15 88.2 190 31.6
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.3e-15 87.8 220 31.4
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.3e-15 87.8 89 44.9
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.0e-15 87.4 89 43.8
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.0e-15 87.4 94 42.6
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.9e-15 87.0 299 29.1
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.9e-15 87.0 83 51.8
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 3.9e-15 87.0 115 40.0
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 5.0e-15 86.7 87 44.8
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.0e-15 86.7 103 43.7
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 5.0e-15 86.7 222 31.1
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.0e-15 86.7 188 33.5
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 5.0e-15 86.7 106 40.6
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 5.0e-15 86.7 154 33.8
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.0e-15 86.7 101 44.6
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 6.6e-15 86.3 147 35.4
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 6.6e-15 86.3 147 35.4
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 6.6e-15 86.3 147 34.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 6.6e-15 86.3 83 50.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 8.6e-15 85.9 189 30.2
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 8.6e-15 85.9 228 31.1
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 8.6e-15 85.9 83 50.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.6e-15 85.9 83 50.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.6e-15 85.9 83 50.6
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.6e-15 85.9 83 50.6
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.6e-15 85.9 83 50.6
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 8.6e-15 85.9 188 33.0
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.1e-14 85.5 220 29.5
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.1e-14 85.5 212 31.6
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.5e-14 85.1 99 41.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-14 85.1 99 41.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.5e-14 85.1 84 44.0
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.9e-14 84.7 87 40.2
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.9e-14 84.7 87 46.0
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.9e-14 84.7 151 34.4
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.9e-14 84.7 234 28.2
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.9e-14 84.7 228 27.6
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.5e-14 84.3 216 28.7
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.5e-14 84.3 102 42.2
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.5e-14 84.3 100 41.0
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.5e-14 84.3 201 29.9
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.5e-14 84.3 87 40.2
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-14 84.3 213 30.5
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.5e-14 84.3 83 45.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.5e-14 84.3 89 43.8
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 3.3e-14 84.0 106 40.6
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.3e-14 84.0 83 49.4
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.3e-14 84.0 99 40.4
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 4.3e-14 83.6 87 42.5
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.3e-14 83.6 87 44.8
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 5.6e-14 83.2 222 31.5
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 5.6e-14 83.2 89 44.9
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 5.6e-14 83.2 89 42.7
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 5.6e-14 83.2 215 29.3
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 5.6e-14 83.2 87 44.8
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 9.5e-14 82.4 89 44.9
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 9.5e-14 82.4 189 28.0
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 9.5e-14 82.4 212 29.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.5e-14 82.4 91 40.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.2e-13 82.0 236 30.9
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-13 82.0 188 29.8
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.6e-13 81.6 89 41.6
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.6e-13 81.6 189 31.2
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.6e-13 81.6 103 36.9
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.1e-13 81.3 143 37.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.1e-13 81.3 111 40.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.1e-13 81.3 92 41.3
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.1e-13 81.3 98 42.9
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.8e-13 80.9 87 40.2
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.6e-13 80.5 87 42.5
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 3.6e-13 80.5 89 40.4
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 3.6e-13 80.5 180 28.3
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.6e-13 80.5 218 28.9
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.7e-13 80.1 106 38.7
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.7e-13 80.1 87 40.2
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 6.2e-13 79.7 104 36.5
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 6.2e-13 79.7 231 27.7
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 8.0e-13 79.3 87 42.5
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 8.0e-13 79.3 102 37.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.0e-12 79.0 120 35.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.0e-12 79.0 212 28.3
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.0e-12 79.0 110 37.3
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.4e-12 78.6 89 39.3
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.4e-12 78.6 240 26.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.8e-12 78.2 113 37.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.8e-12 78.2 222 28.8
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 1.8e-12 78.2 99 35.4
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.3e-12 77.8 78 44.9
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.1e-12 77.4 189 27.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 3.1e-12 77.4 209 29.7
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 4.0e-12 77.0 93 45.2
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 5.2e-12 76.6 196 29.6
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 5.2e-12 76.6 189 31.2
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.8e-12 76.3 87 40.2
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.9e-12 75.9 87 39.1
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.9e-12 75.9 213 28.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 8.9e-12 75.9 178 33.1
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-11 75.5 100 41.0
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-11 75.5 100 41.0
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.5e-11 75.1 247 28.3
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-11 75.1 87 41.4
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.0e-11 74.7 84 39.3
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.0e-11 74.7 87 39.1
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.4e-11 73.9 245 28.6
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.4e-11 73.9 84 41.7
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 3.4e-11 73.9 87 41.4
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 5.8e-11 73.2 84 42.9
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 7.5e-11 72.8 101 35.6
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.8e-11 72.4 87 36.8
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 9.8e-11 72.4 87 36.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.7e-10 71.6 88 39.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.7e-10 71.6 81 43.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 8.3e-10 69.3 85 36.5
Mapoly0001s0271 Marchantia polymorpha HOM05D004732 ORTHO05D005424 6.0e-08 63.2 268 28.4
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.0e-07 62.4 69 44.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.9e-07 60.5 65 44.6
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.5e-06 58.5 164 31.1


User provided reference genes

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