Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 2197.2 1121 100.0
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-235 820.5 1151 45.7
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-223 781.2 925 49.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.6e-220 768.8 1164 44.1
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.0e-219 765.0 1135 43.9
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.0e-178 628.6 1125 39.6
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.4e-176 622.1 1127 39.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-161 574.7 515 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 3.0e-157 560.5 538 56.3
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.2e-151 540.4 485 57.1
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.3e-103 380.9 485 46.6
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 7.5e-100 369.8 488 43.4
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.9e-98 365.2 487 44.1
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.9e-95 355.1 488 42.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.6e-94 352.1 481 44.3
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 6.8e-93 346.7 481 43.0
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.2e-92 345.9 488 41.8
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.5e-92 345.5 487 41.5
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 3.4e-92 344.4 485 42.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 4.4e-92 344.0 489 42.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 9.9e-92 342.8 485 42.7
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 9.9e-92 342.8 482 42.3
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.2e-91 341.7 488 40.8
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.2e-91 341.7 485 41.9
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 2.9e-91 341.3 606 38.6
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 4.9e-91 340.5 490 41.4
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 6.4e-91 340.1 533 41.3
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.1e-90 339.3 485 41.9
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.4e-90 339.0 604 38.4
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 3.2e-90 337.8 489 41.9
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 7.1e-90 336.7 481 40.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 7.1e-90 336.7 485 42.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 9.2e-90 336.3 512 40.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 4.6e-89 334.0 490 40.4
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 6.0e-89 333.6 488 41.6
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 7.8e-89 333.2 489 42.1
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.3e-88 331.6 483 42.2
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.3e-88 331.6 488 41.8
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.5e-87 328.9 616 36.9
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.5e-87 328.9 604 38.2
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.5e-87 328.9 616 37.0
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.5e-87 328.9 488 41.2
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 4.3e-87 327.4 488 41.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.6e-87 327.0 488 40.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 5.6e-87 327.0 488 41.6
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 5.6e-87 327.0 481 40.7
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 7.3e-87 326.6 488 40.6
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 7.3e-87 326.6 488 40.6
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 9.5e-87 326.2 488 40.6
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 9.5e-87 326.2 480 40.6
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-86 325.9 488 40.6
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.6e-86 325.5 481 40.5
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.8e-86 324.7 488 40.4
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.6e-86 324.3 485 41.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 3.6e-86 324.3 481 40.5
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 8.1e-86 323.2 480 40.0
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-85 322.8 488 40.6
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.1e-85 322.8 480 40.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.4e-85 322.4 627 35.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.4e-85 322.4 490 40.2
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.8e-85 322.0 481 39.9
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.1e-85 321.2 480 39.8
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 4.0e-85 320.9 481 40.3
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.0e-85 320.9 488 40.4
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 5.2e-85 320.5 473 40.8
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 5.2e-85 320.5 481 38.9
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 6.8e-85 320.1 482 40.0
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 6.8e-85 320.1 482 40.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 8.9e-85 319.7 483 40.6
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 8.9e-85 319.7 480 40.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.2e-84 319.3 478 40.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.2e-84 319.3 485 39.4
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.2e-84 319.3 483 40.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.2e-84 319.3 475 39.8
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.5e-84 318.9 483 40.6
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.5e-84 318.9 489 40.5
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.0e-84 318.5 631 34.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.4e-84 317.8 481 40.5
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 5.8e-84 317.0 485 39.0
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 5.8e-84 317.0 562 36.5
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 5.8e-84 317.0 482 39.6
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 5.8e-84 317.0 560 36.6
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 5.8e-84 317.0 488 39.1
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 7.6e-84 316.6 483 39.8
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 7.6e-84 316.6 595 37.5
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 9.9e-84 316.2 610 35.7
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.7e-83 315.5 483 39.8
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-83 315.5 488 38.9
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.7e-83 315.5 491 39.3
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.2e-83 315.1 488 39.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.9e-83 314.7 488 39.3
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 3.8e-83 314.3 490 39.2
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 6.4e-83 313.5 480 39.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.4e-83 313.5 535 38.1
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.1e-82 312.8 481 40.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.4e-82 312.4 482 39.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-82 312.4 478 40.6
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.4e-82 312.4 478 40.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.9e-82 312.0 483 39.8
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.9e-82 312.0 482 39.2
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.9e-82 312.0 483 39.1
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.9e-82 312.0 425 43.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 3.2e-82 311.2 489 39.1
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 4.2e-82 310.8 485 39.4
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.2e-81 309.3 534 37.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.2e-81 309.3 488 39.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.6e-81 307.4 481 39.3
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.3e-80 305.1 488 38.3
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 3.9e-80 304.3 488 38.9
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 3.9e-80 304.3 587 36.3
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 6.6e-80 303.5 480 41.0
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 8.7e-80 303.1 489 39.5
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 2.5e-79 301.6 481 38.9
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 9.6e-79 299.7 479 38.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-78 299.3 586 35.7
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.7e-78 297.4 480 39.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.1e-77 296.2 637 33.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.1e-77 296.2 536 36.6
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.4e-76 291.2 489 38.0
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 9.9e-76 289.7 480 39.0
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.4e-74 285.0 488 37.3
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.0e-73 280.4 488 36.3
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.3e-71 274.6 443 39.5
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 3.1e-69 268.1 389 42.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.2e-67 261.9 480 37.3
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.8e-67 261.2 484 36.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.0e-64 253.1 458 38.0
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.9e-63 248.8 192 59.4
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 4.3e-63 247.7 382 37.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.3e-54 219.5 479 32.6
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 5.3e-53 214.2 186 53.2
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 6.9e-53 213.8 484 32.9
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.2e-43 182.2 545 29.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.7e-39 166.8 244 40.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.6e-28 132.1 485 26.6
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.8e-24 117.1 132 52.3
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.5e-15 89.7 72 59.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 4.8e-14 84.7 349 28.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.4e-08 66.6 93 35.5
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.8e-08 64.3 46 65.2
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.8e-06 58.9 170 25.9
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.8e-06 58.9 69 43.5
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 6.3e-06 57.8 76 44.7
Prupe.7G205700 Prunus persica HOM05D001027 ORTHO05D000844 6.3e-06 57.8 59 52.5


User provided reference genes

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