Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.5e-195 685.3 348 100.0
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 9.1e-137 490.7 319 77.4
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 1.3e-103 380.6 311 60.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 5.4e-97 358.6 304 57.2
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 4.6e-96 355.5 309 54.0
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.0e-95 354.4 313 53.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 6.6e-95 351.7 340 51.8
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.9e-94 350.1 309 53.7
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.5e-94 349.7 306 54.2
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 3.3e-94 349.4 309 53.1
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 4.3e-94 349.0 309 54.4
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 4.3e-94 349.0 346 50.6
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 9.5e-94 347.8 306 53.6
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 9.5e-94 347.8 308 53.9
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 9.5e-94 347.8 328 51.5
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.2e-93 347.4 328 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 4.7e-93 345.5 308 56.5
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 6.2e-93 345.1 319 53.6
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 6.2e-93 345.1 311 53.1
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.1e-92 344.4 304 53.9
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 1.1e-92 344.4 305 54.1
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 1.8e-92 343.6 309 52.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 3.1e-92 342.8 309 52.4
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 3.1e-92 342.8 307 53.1
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 5.2e-92 342.0 305 53.8
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.2e-92 342.0 309 53.7
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.2e-92 342.0 309 53.4
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 6.8e-92 341.7 309 53.7
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 8.9e-92 341.3 306 53.9
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 8.9e-92 341.3 309 52.4
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.5e-91 340.5 309 51.5
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 1.5e-91 340.5 309 51.8
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 1.5e-91 340.5 327 51.1
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.5e-91 340.5 328 50.6
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.5e-91 340.5 309 53.7
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.0e-91 340.1 309 52.1
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 3.4e-91 339.3 325 51.1
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.4e-91 339.3 313 52.7
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.4e-91 339.3 301 53.2
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.8e-91 338.6 309 51.8
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.8e-91 338.6 309 53.1
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 5.8e-91 338.6 301 54.2
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 9.8e-91 337.8 308 51.3
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 9.8e-91 337.8 309 51.8
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 9.8e-91 337.8 306 52.9
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.3e-90 337.4 300 54.7
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.7e-90 337.0 309 51.5
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-90 337.0 306 52.3
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.7e-90 337.0 307 50.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.9e-90 336.3 316 52.5
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.9e-90 336.3 316 52.5
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 3.7e-90 335.9 328 49.7
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 3.7e-90 335.9 328 49.7
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.7e-90 335.9 311 53.1
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.7e-90 335.9 304 52.6
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 3.7e-90 335.9 317 49.8
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.9e-90 335.5 309 53.1
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.9e-90 335.5 302 53.0
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 6.4e-90 335.1 307 53.1
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.1e-89 334.3 309 51.8
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.1e-89 334.3 302 53.6
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.2e-89 332.8 335 49.9
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 3.2e-89 332.8 317 50.2
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 3.2e-89 332.8 339 48.7
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.2e-89 332.8 330 49.7
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.1e-89 332.4 306 52.0
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 5.4e-89 332.0 306 51.0
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 7.1e-89 331.6 331 48.9
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 7.1e-89 331.6 304 51.3
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 2.1e-88 330.1 309 49.5
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.1e-88 330.1 295 53.2
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.7e-88 329.7 318 51.6
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 3.5e-88 329.3 318 50.0
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 6.0e-88 328.6 302 52.3
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.0e-87 327.8 316 49.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.3e-87 327.4 329 48.3
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.3e-87 327.4 303 51.8
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.7e-87 327.0 318 49.4
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 1.7e-87 327.0 310 51.3
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.0e-87 326.2 305 51.8
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 3.9e-87 325.9 350 48.6
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.1e-87 325.5 313 51.4
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 5.1e-87 325.5 311 50.2
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 6.6e-87 325.1 301 52.8
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 8.6e-87 324.7 332 47.3
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.1e-86 324.3 307 51.8
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.5e-86 323.2 316 47.8
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.5e-86 323.2 335 49.3
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.5e-86 323.2 302 50.7
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 7.3e-86 321.6 323 48.0
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 7.3e-86 321.6 302 52.6
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 9.5e-86 321.2 325 49.8
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.2e-85 320.9 309 48.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.6e-85 320.5 324 47.5
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 2.1e-85 320.1 307 51.1
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 2.1e-85 320.1 303 51.5
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 2.8e-85 319.7 323 48.0
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 2.8e-85 319.7 323 48.0
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 6.2e-85 318.5 312 50.6
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 8.1e-85 318.2 301 51.5
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 8.1e-85 318.2 325 49.8
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.1e-84 317.8 335 48.7
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.0e-84 315.8 314 48.1
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.2e-84 315.5 301 51.2
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 6.8e-84 315.1 330 47.0
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 8.9e-84 314.7 301 51.5
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 8.9e-84 314.7 324 46.9
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 3.4e-83 312.8 317 47.6
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 9.9e-83 311.2 309 49.5
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.4e-82 308.5 314 48.1
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.9e-81 307.0 312 49.4
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.1e-81 305.8 276 52.2
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.3e-79 300.8 274 52.2
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.7e-79 300.4 345 44.6
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 2.3e-79 300.1 306 48.4
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 5.1e-79 298.9 281 49.1
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.3e-78 295.8 279 51.6
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 3.6e-77 292.7 275 52.4
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 2.0e-75 287.0 264 50.4
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.6e-75 286.6 279 48.4
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 3.4e-75 286.2 260 51.5
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 4.9e-74 282.3 255 53.3
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 1.2e-72 277.7 319 46.7
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 3.5e-72 276.2 338 45.9
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 4.3e-70 269.2 370 40.8
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.8e-69 265.8 306 45.1
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.1e-68 264.6 335 42.1
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.8e-68 263.8 365 43.0
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.0e-67 260.4 365 42.2
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.2e-66 256.9 236 52.1
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.1e-65 254.6 246 52.0
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.9e-62 243.8 234 50.9
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.5e-62 243.4 332 41.6
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.4e-57 227.6 279 41.2
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 2.1e-56 223.8 309 38.5
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.6e-56 222.6 222 49.1
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.6e-53 214.2 220 48.2
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 6.2e-53 212.2 306 37.9
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 5.3e-52 209.1 171 57.3
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 5.3e-52 209.1 171 57.3
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.4e-51 206.5 159 61.6
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 3.2e-49 199.9 333 36.6
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.8e-47 194.1 313 37.4
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 5.5e-41 172.6 171 47.4
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.8e-39 167.5 308 36.4
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.5e-38 164.5 135 57.8
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.7e-34 151.0 317 35.0
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 5.0e-34 149.4 411 30.4
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 3.9e-31 139.8 130 50.0
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.4e-28 131.3 112 56.2
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.9e-28 129.0 108 56.5
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.7e-23 112.5 128 46.1
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 4.4e-14 83.2 159 32.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 5.3e-12 76.3 167 32.3
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.8e-10 70.1 79 43.0
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 5.0e-10 69.7 105 38.1
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.5e-06 58.2 59 45.8


User provided reference genes

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