Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.3e-144 516.5 292 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.4e-45 186.8 306 45.8
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.4e-45 186.8 137 73.7
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.0e-40 169.9 235 47.7
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 3.0e-40 169.9 287 40.1
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 3.9e-40 169.5 282 41.1
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.9e-40 169.5 195 52.8
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 3.9e-40 169.5 280 41.4
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 5.1e-40 169.1 281 42.3
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 5.1e-40 169.1 279 42.3
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 8.7e-40 168.3 228 47.4
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 8.7e-40 168.3 235 47.7
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.5e-39 167.5 149 59.1
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.5e-39 167.5 280 42.5
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.5e-39 167.5 190 52.1
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.5e-39 167.5 281 42.0
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.9e-39 167.2 279 42.3
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 2.5e-39 166.8 279 43.4
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.5e-39 166.8 281 42.3
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 3.3e-39 166.4 283 42.8
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.3e-39 166.0 290 40.0
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 4.3e-39 166.0 279 40.5
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 5.6e-39 165.6 190 52.1
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 7.3e-39 165.2 282 41.8
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 7.3e-39 165.2 279 42.7
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 7.3e-39 165.2 164 56.1
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 9.6e-39 164.9 230 46.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.3e-38 164.5 280 40.7
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.6e-38 164.1 279 40.9
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.6e-38 164.1 280 41.1
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.6e-38 164.1 195 51.8
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.6e-38 164.1 279 41.2
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 2.1e-38 163.7 279 40.1
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.1e-38 163.7 164 55.5
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.8e-38 163.3 232 46.1
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 3.6e-38 162.9 137 62.8
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 3.6e-38 162.9 227 47.6
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 3.6e-38 162.9 158 57.0
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 3.6e-38 162.9 137 64.2
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 4.8e-38 162.5 137 62.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 4.8e-38 162.5 229 46.3
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 4.8e-38 162.5 279 42.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 4.8e-38 162.5 232 47.4
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 4.8e-38 162.5 290 42.8
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 4.8e-38 162.5 280 42.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 6.2e-38 162.2 279 42.3
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 6.2e-38 162.2 137 62.8
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 6.2e-38 162.2 279 39.8
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.1e-37 161.4 279 43.4
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.1e-37 161.4 279 43.4
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.1e-37 161.4 279 41.9
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-37 161.4 279 41.2
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.1e-37 161.4 160 58.8
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 1.4e-37 161.0 283 41.0
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.4e-37 161.0 282 42.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.4e-37 161.0 182 53.8
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.4e-37 161.0 198 50.0
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.8e-37 160.6 279 41.9
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.8e-37 160.6 279 41.9
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.8e-37 160.6 246 45.1
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.8e-37 160.6 191 51.3
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-37 160.6 191 51.3
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.8e-37 160.6 245 44.5
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 2.4e-37 160.2 281 39.5
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.4e-37 160.2 279 40.9
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 2.4e-37 160.2 287 41.1
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.1e-37 159.8 245 44.1
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.0e-37 159.5 236 45.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 4.0e-37 159.5 279 41.2
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 4.0e-37 159.5 196 50.0
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.0e-37 159.5 191 51.3
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 4.0e-37 159.5 199 48.2
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 4.0e-37 159.5 186 50.5
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 4.0e-37 159.5 231 47.2
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 4.0e-37 159.5 184 52.2
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 5.3e-37 159.1 281 40.9
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 5.3e-37 159.1 195 48.7
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.9e-37 158.7 280 40.0
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 9.0e-37 158.3 150 59.3
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 9.0e-37 158.3 195 52.3
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 9.0e-37 158.3 137 59.9
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.2e-36 157.9 279 40.1
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.2e-36 157.9 223 47.1
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.2e-36 157.9 281 39.9
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.5e-36 157.5 179 52.5
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.5e-36 157.5 180 52.2
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-36 157.5 279 41.2
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.5e-36 157.5 245 43.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.0e-36 157.1 281 40.9
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.6e-36 156.8 136 61.0
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 2.6e-36 156.8 278 41.0
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 4.5e-36 156.0 193 49.7
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.5e-36 156.0 189 51.9
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 7.6e-36 155.2 279 38.7
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 9.9e-36 154.8 283 41.0
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 9.9e-36 154.8 265 42.3
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 9.9e-36 154.8 186 53.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.7e-35 154.1 183 50.3
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.7e-35 154.1 205 47.8
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.2e-35 153.7 281 42.7
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 3.8e-35 152.9 281 38.8
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.9e-35 152.5 245 43.3
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 4.9e-35 152.5 281 38.4
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.4e-34 151.0 288 39.2
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 3.2e-34 149.8 228 47.4
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 3.2e-34 149.8 279 39.4
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.7e-33 146.7 177 52.0
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 3.5e-33 146.4 276 38.0
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.0e-33 145.6 152 53.9
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 7.9e-33 145.2 122 62.3
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.0e-32 144.8 285 42.1
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.1e-32 142.5 312 36.5
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 3.3e-31 139.8 321 35.5
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 3.7e-30 136.3 279 37.3
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.2e-30 135.6 165 52.7
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.9e-27 126.7 262 40.8
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 7.9e-25 118.6 133 53.4
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 7.9e-25 118.6 280 36.4
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 2.8e-22 110.2 255 37.3
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 4.8e-22 109.4 220 38.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 6.2e-22 109.0 87 64.4
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.0e-20 104.0 87 59.8
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 7.6e-20 102.1 86 60.5
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 4.9e-19 99.4 123 48.8
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.4e-18 97.8 115 47.0
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.1e-15 88.2 72 68.1
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 8.2e-14 82.0 165 39.4
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 5.3e-13 79.3 93 50.5
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 2.6e-12 77.0 64 65.6
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.4e-12 76.6 190 38.4
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.4e-10 71.2 134 40.3
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 6.1e-09 65.9 203 31.5
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.3e-08 64.7 197 34.5
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.3e-08 63.9 195 32.8
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 3.9e-08 63.2 117 39.3
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.3e-07 60.1 217 32.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 4.8e-06 56.2 283 30.7
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.8e-06 56.2 49 61.2
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 6.3e-06 55.8 51 56.9


User provided reference genes

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