Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.0e-113 413.3 197 100.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 8.1e-50 201.1 179 52.0
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 2.4e-49 199.5 179 52.0
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 2.0e-48 196.4 176 50.6
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.0e-47 194.1 179 48.6
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.2e-47 193.0 179 49.2
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.9e-47 192.6 175 49.7
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.9e-47 192.6 175 50.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 2.9e-47 192.6 175 50.3
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 3.8e-47 192.2 188 50.5
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 8.4e-47 191.0 186 49.5
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.9e-46 189.9 175 49.1
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.9e-46 189.9 175 49.7
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.9e-46 189.9 175 49.7
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.5e-46 189.5 177 48.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.5e-46 189.5 177 48.0
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 2.5e-46 189.5 175 49.7
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 2.5e-46 189.5 181 47.5
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.5e-46 189.5 186 51.1
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 2.5e-46 189.5 187 47.1
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 3.2e-46 189.1 178 48.9
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 5.5e-46 188.3 186 50.5
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 7.1e-46 188.0 180 51.1
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 9.3e-46 187.6 175 49.7
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 9.3e-46 187.6 176 48.9
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.6e-45 186.8 174 49.4
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.1e-45 186.4 186 47.8
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.1e-45 186.4 188 50.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.7e-45 186.0 176 48.3
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.7e-45 186.0 175 49.7
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 2.7e-45 186.0 187 47.1
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 3.5e-45 185.7 186 47.8
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.6e-45 185.3 175 48.6
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.0e-45 184.9 188 45.7
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 6.0e-45 184.9 181 47.0
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 7.9e-45 184.5 189 47.1
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 7.9e-45 184.5 190 46.8
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.0e-44 184.1 186 47.3
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.3e-44 183.7 180 48.3
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.3e-44 183.7 188 47.9
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.3e-44 183.7 175 49.7
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.8e-44 183.3 183 49.2
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.8e-44 183.3 175 49.1
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.8e-44 183.3 178 48.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.8e-44 183.3 181 48.1
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 2.3e-44 183.0 175 49.1
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 2.3e-44 183.0 175 48.6
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.0e-44 182.6 176 47.7
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 3.0e-44 182.6 186 46.2
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.9e-44 182.2 179 46.4
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 5.1e-44 181.8 175 47.4
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 5.1e-44 181.8 180 47.2
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 5.1e-44 181.8 175 48.0
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 6.7e-44 181.4 175 49.7
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 8.7e-44 181.0 180 46.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.5e-43 180.3 186 44.6
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.5e-43 180.3 175 46.9
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.5e-43 180.3 175 48.6
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.9e-43 179.9 175 48.0
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.9e-43 179.9 182 47.8
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 3.3e-43 179.1 175 48.0
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 3.3e-43 179.1 176 47.2
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 4.3e-43 178.7 186 45.7
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.3e-43 178.7 186 45.7
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 7.4e-43 177.9 176 46.0
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.3e-42 177.2 175 49.7
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.6e-42 176.8 178 46.1
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.1e-42 176.4 178 48.9
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 2.1e-42 176.4 186 45.7
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.1e-42 176.4 175 46.9
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 2.8e-42 176.0 177 48.0
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 2.8e-42 176.0 173 46.8
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.8e-42 176.0 173 47.4
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 3.7e-42 175.6 183 48.1
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 3.7e-42 175.6 175 47.4
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 6.2e-42 174.9 175 46.9
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 6.2e-42 174.9 178 48.3
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 8.2e-42 174.5 182 46.2
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.1e-41 174.1 177 47.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.4e-41 173.7 186 42.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.4e-41 172.9 172 46.5
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.4e-41 172.9 179 45.8
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 3.1e-41 172.6 155 53.5
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 4.0e-41 172.2 175 45.1
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 4.0e-41 172.2 175 45.1
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 6.9e-41 171.4 177 47.5
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 6.9e-41 171.4 167 47.9
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 1.2e-40 170.6 167 47.9
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-40 170.2 176 46.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 7.6e-40 167.9 154 50.0
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.0e-39 167.5 153 49.7
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.3e-39 167.2 178 42.7
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.3e-39 167.2 186 43.5
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.9e-39 166.0 184 43.5
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 5.0e-39 165.2 177 44.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.9e-38 163.3 178 44.9
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 4.2e-38 162.2 175 44.6
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.5e-38 161.8 175 42.9
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 7.1e-38 161.4 172 44.8
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 7.1e-38 161.4 165 45.5
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 9.3e-38 161.0 175 44.0
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 9.3e-38 161.0 154 48.1
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.7e-34 149.1 152 44.7
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 6.3e-34 148.3 156 44.9
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 8.2e-34 147.9 150 46.0
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.8e-33 146.7 166 44.0
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.9e-33 144.8 155 42.6
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.5e-30 136.3 176 43.2
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.7e-29 132.9 150 41.3
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 7.9e-29 131.3 131 45.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 3.1e-25 119.4 122 43.4
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 3.4e-24 115.9 141 41.8
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 1.7e-18 97.1 191 31.9
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.0e-17 91.7 132 38.6
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 7.7e-16 88.2 181 34.3
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.1e-09 67.8 62 51.6
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.1e-09 65.9 62 46.8
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 5.3e-09 65.5 157 29.9
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 9.1e-09 64.7 157 29.9
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 9.1e-09 64.7 157 29.9
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 7.7e-08 61.6 160 30.6
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.0e-07 61.2 158 29.1
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.7e-07 60.5 158 29.1
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.7e-07 60.5 151 31.1
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 2.9e-07 59.7 158 29.7
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.9e-07 59.7 158 27.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.9e-07 59.7 162 28.4
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 2.9e-07 59.7 186 28.5
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 3.8e-07 59.3 163 30.7
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 5.0e-07 58.9 168 29.8
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 5.0e-07 58.9 162 27.8
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 5.0e-07 58.9 156 29.5
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 5.0e-07 58.9 159 29.6
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 5.0e-07 58.9 155 27.1
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 5.0e-07 58.9 153 31.4
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 6.5e-07 58.5 154 29.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.5e-06 57.4 154 29.9
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.5e-06 57.4 154 29.2
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.5e-06 57.4 156 29.5
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.5e-06 57.4 158 27.8
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.9e-06 57.0 159 30.2
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.9e-06 57.0 188 27.7
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.9e-06 57.0 163 29.4
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.9e-06 57.0 157 30.6
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 1.9e-06 57.0 169 29.0
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 2.5e-06 56.6 194 27.3
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 2.5e-06 56.6 166 28.9
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.5e-06 56.6 166 28.9
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.5e-06 56.6 166 28.9
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.5e-06 56.6 166 28.9
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 2.5e-06 56.6 157 29.9
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 2.5e-06 56.6 162 29.6
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.2e-06 56.2 167 28.7
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.2e-06 56.2 154 29.2
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 3.2e-06 56.2 158 27.8
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 3.2e-06 56.2 156 29.5
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 3.2e-06 56.2 161 30.4
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.2e-06 56.2 159 28.9
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 3.2e-06 56.2 156 28.2
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 4.2e-06 55.8 155 27.1
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 4.2e-06 55.8 155 29.0
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 4.2e-06 55.8 155 29.0
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.2e-06 55.8 187 26.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.2e-06 55.8 187 26.2
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 4.2e-06 55.8 187 26.2
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 4.2e-06 55.8 158 27.8
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 4.2e-06 55.8 152 28.9
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 5.5e-06 55.5 155 29.0
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 5.5e-06 55.5 151 27.8
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 7.2e-06 55.1 164 26.2
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 7.2e-06 55.1 161 28.0
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 7.2e-06 55.1 157 28.0
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 7.2e-06 55.1 158 28.5
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 7.2e-06 55.1 190 27.4
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 7.2e-06 55.1 163 28.8
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 7.2e-06 55.1 155 28.4
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 9.4e-06 54.7 159 28.9
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 9.4e-06 54.7 156 30.1
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 9.4e-06 54.7 172 27.3


User provided reference genes

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