Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.9e-217 758.8 367 100.0
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.5e-182 642.9 362 85.6
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 4.9e-149 531.6 360 68.6
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 3.2e-148 528.9 360 68.3
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.2e-148 528.9 360 68.3
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 3.2e-148 528.9 359 68.8
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 5.4e-148 528.1 360 68.6
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 7.1e-148 527.7 360 68.3
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 7.1e-148 527.7 358 67.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.2e-147 526.9 358 68.4
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.6e-147 526.6 360 67.8
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 3.5e-147 525.4 359 70.8
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 3.5e-147 525.4 360 67.8
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.5e-147 525.4 358 68.7
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 6.0e-147 524.6 357 68.6
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 6.0e-147 524.6 358 69.6
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 7.8e-147 524.2 358 67.6
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 7.8e-147 524.2 360 67.8
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 2.3e-146 522.7 358 67.3
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 3.0e-146 522.3 358 67.6
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 5.1e-146 521.5 362 68.2
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 8.6e-146 520.8 358 67.6
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 1.1e-145 520.4 358 67.0
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.9e-145 519.6 358 66.8
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 4.3e-145 518.5 358 67.0
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 4.3e-145 518.5 358 67.9
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 5.6e-145 518.1 358 68.7
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.6e-145 518.1 359 67.7
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.2e-144 516.9 358 67.3
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.2e-144 516.9 360 66.4
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 1.6e-144 516.5 358 67.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.6e-144 516.5 357 66.9
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 2.1e-144 516.2 358 66.8
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 2.1e-144 516.2 359 68.2
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 2.1e-144 516.2 361 66.8
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.1e-144 516.2 358 67.3
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.1e-144 516.2 358 67.6
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 2.8e-144 515.8 360 67.5
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 2.8e-144 515.8 358 67.0
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.8e-144 515.8 358 66.8
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 3.6e-144 515.4 358 67.6
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 4.7e-144 515.0 358 66.8
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 4.7e-144 515.0 358 66.8
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 6.2e-144 514.6 358 67.9
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 8.1e-144 514.2 358 66.5
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 8.1e-144 514.2 358 67.6
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.1e-143 513.8 358 66.8
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.4e-143 513.5 358 65.9
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 1.4e-143 513.5 358 67.0
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.8e-143 513.1 360 65.8
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 2.4e-143 512.7 360 65.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.1e-143 512.3 358 66.2
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.1e-143 512.3 359 67.1
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 3.1e-143 512.3 359 67.4
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 6.9e-143 511.1 358 67.0
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 6.9e-143 511.1 358 66.8
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 8.9e-143 510.8 358 66.8
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 8.9e-143 510.8 358 66.5
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 2.6e-142 509.2 360 66.1
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 2.6e-142 509.2 358 67.0
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 4.4e-142 508.4 358 67.0
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 5.8e-142 508.1 360 65.8
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 1.3e-141 506.9 358 65.6
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.3e-141 506.9 360 64.2
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 1.3e-141 506.9 358 66.2
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.3e-141 506.9 360 66.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.7e-141 506.5 362 64.4
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.7e-141 506.5 358 65.6
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.2e-141 506.1 358 65.6
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 2.9e-141 505.8 358 66.2
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 2.9e-141 505.8 358 65.6
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.9e-141 505.8 358 65.6
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.9e-141 505.8 366 64.2
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 4.9e-141 505.0 385 63.4
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 4.9e-141 505.0 385 63.4
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 6.4e-141 504.6 360 66.7
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.4e-140 503.4 363 65.3
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 2.4e-140 502.7 360 65.8
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 3.2e-140 502.3 360 66.1
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.2e-140 501.9 358 66.8
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 4.2e-140 501.9 360 63.6
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 5.4e-140 501.5 360 65.6
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 9.3e-140 500.7 359 64.9
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 9.3e-140 500.7 365 63.6
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.2e-139 500.4 360 65.3
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 1.2e-139 500.4 359 64.6
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 1.6e-139 500.0 358 66.2
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.1e-139 499.6 358 66.2
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 2.1e-139 499.6 360 65.3
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 3.5e-139 498.8 358 64.8
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.8e-139 497.7 356 66.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.0e-138 497.3 358 65.4
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.0e-138 497.3 358 65.9
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 1.3e-138 496.9 358 64.5
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.7e-138 496.5 359 64.3
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 3.9e-138 495.4 360 64.4
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 3.9e-138 495.4 400 60.5
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 6.6e-138 494.6 364 65.7
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.7e-138 494.2 356 65.7
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.1e-137 493.8 391 60.6
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.5e-137 493.4 360 63.3
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.9e-137 493.0 360 64.4
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.9e-137 493.0 363 62.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 6.2e-136 488.0 361 60.7
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 1.1e-135 487.3 395 59.7
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 4.0e-135 485.3 361 61.2
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.5e-134 483.4 370 63.2
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 9.3e-132 474.2 442 52.9
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.2e-131 473.8 366 60.9
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 4.6e-131 471.9 357 63.6
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 6.9e-127 458.0 347 63.4
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 6.4e-125 451.4 374 59.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 2.3e-122 443.0 377 57.8
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 3.9e-122 442.2 398 55.5
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 4.0e-119 432.2 358 58.4
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 9.6e-113 411.0 395 52.7
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 6.1e-107 391.7 273 68.5
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 7.9e-107 391.3 359 54.9
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 3.0e-106 389.4 314 60.8
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 7.4e-105 384.8 358 54.7
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 9.7e-105 384.4 359 51.8
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 2.0e-102 376.7 372 50.3
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 8.5e-101 371.3 362 53.6
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 1.1e-97 360.9 242 67.4
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.7e-88 330.5 359 50.4
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 6.5e-85 318.5 394 44.9
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 9.7e-81 304.7 402 43.5
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 9.6e-28 128.6 96 65.6
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 6.2e-27 125.9 93 61.3
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 6.2e-27 125.9 93 61.3
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 9.0e-18 95.5 68 64.7
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 7.6e-17 92.4 71 59.2
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 9.9e-17 92.0 71 59.2
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 8.4e-16 89.0 66 62.1
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.6e-14 83.2 60 56.7
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.3e-13 81.6 55 60.0
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 3.3e-12 77.0 95 40.0
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.3e-12 77.0 55 56.4
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.4e-08 62.8 80 45.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.2e-06 58.5 103 35.9
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.2e-06 58.5 122 33.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.6e-06 56.6 116 31.9


User provided reference genes

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