Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_1650 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.0e-87 326.6 153 100.0
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 4.0e-52 208.4 153 66.0
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.1e-37 159.5 145 55.9
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 4.9e-26 121.7 92 54.3
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.4e-25 119.4 103 51.5
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 7.1e-17 91.3 86 43.0
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 1.0e-15 87.4 101 42.6
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.3e-15 87.0 93 45.2
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 1.7e-15 86.7 98 40.8
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 1.7e-15 86.7 93 45.2
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 3.0e-15 85.9 93 44.1
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 3.0e-15 85.9 89 44.9
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 3.0e-15 85.9 101 41.6
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.5e-14 83.6 92 42.4
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 1.5e-14 83.6 83 42.2
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.5e-14 82.8 78 44.9
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.5e-14 82.8 78 43.6
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 2.5e-14 82.8 60 55.0
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 4.3e-14 82.0 84 41.7
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 7.3e-14 81.3 100 38.0
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 9.5e-14 80.9 60 51.7
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 9.5e-14 80.9 60 53.3
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 9.5e-14 80.9 60 51.7
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.2e-13 80.5 60 53.3
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 1.2e-13 80.5 60 53.3
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 1.2e-13 80.5 60 53.3
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.2e-13 80.5 60 53.3
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.2e-13 80.5 60 53.3
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 1.2e-13 80.5 92 41.3
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 1.2e-13 80.5 97 40.2
SMO331G0005 Selaginella moellendorffii HOM05D003440 ORTHO05D003953 1.2e-13 80.5 57 56.1
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 1.2e-13 80.5 60 53.3
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.6e-13 80.1 101 36.6
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.6e-13 80.1 104 37.5
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 1.6e-13 80.1 60 51.7
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.6e-13 80.1 60 51.7
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 2.1e-13 79.7 60 53.3
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 2.1e-13 79.7 60 53.3
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 2.1e-13 79.7 61 54.1
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 2.1e-13 79.7 60 51.7
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 53.3
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 2.8e-13 79.3 66 47.0
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 50.0
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 51.7
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 51.7
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 2.8e-13 79.3 60 51.7
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 53.3
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 53.3
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 53.3
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 53.3
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 51.7
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 3.6e-13 79.0 95 38.9
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 51.7
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 3.6e-13 79.0 60 51.7
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 4.7e-13 78.6 60 51.7
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 4.7e-13 78.6 60 51.7
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 4.7e-13 78.6 95 40.0
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 6.2e-13 78.2 60 50.0
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 6.2e-13 78.2 60 50.0
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 6.2e-13 78.2 106 34.0
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 8.1e-13 77.8 106 34.9
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 8.1e-13 77.8 94 41.5
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 1.1e-12 77.4 60 50.0
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 1.1e-12 77.4 60 50.0
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 1.1e-12 77.4 60 50.0
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.4e-12 77.0 60 50.0
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.4e-12 77.0 99 34.3
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.4e-12 77.0 80 41.2
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.8e-12 76.6 59 49.2
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.8e-12 76.6 60 50.0
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.8e-12 76.6 61 50.8
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.8e-12 76.6 60 50.0
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 1.8e-12 76.6 60 48.3
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 2.3e-12 76.3 59 49.2
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 2.3e-12 76.3 59 49.2
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.1e-12 75.9 59 49.2
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.1e-12 75.9 59 49.2
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 3.1e-12 75.9 59 49.2
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.2e-12 75.1 59 47.5
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 6.8e-12 74.7 59 49.2
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 6.8e-12 74.7 60 48.3
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 8.9e-12 74.3 60 48.3
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 8.9e-12 74.3 60 48.3
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.2e-11 73.9 87 43.7
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.5e-11 73.6 60 48.3
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 2.0e-11 73.2 60 46.7
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.0e-11 73.2 59 47.5
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 2.6e-11 72.8 56 50.0
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 2.6e-11 72.8 106 38.7
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 3.4e-11 72.4 60 46.7
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 3.4e-11 72.4 60 51.7
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 4.4e-11 72.0 57 43.9
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 4.4e-11 72.0 77 42.9
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.4e-11 72.0 59 47.5
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.4e-11 72.0 59 47.5
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 4.4e-11 72.0 59 47.5
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 5.8e-11 71.6 61 45.9
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 7.6e-11 71.2 59 47.5
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 1.3e-10 70.5 82 41.5
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 2.2e-10 69.7 60 46.7
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 3.8e-10 68.9 97 37.1
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 6.4e-10 68.2 52 53.8
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 6.4e-10 68.2 70 41.4
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 6.4e-10 68.2 56 44.6
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 8.4e-10 67.8 56 44.6
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.4e-09 67.0 52 51.9
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.4e-09 67.0 52 51.9
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.4e-09 67.0 59 47.5
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 1.9e-09 66.6 59 45.8
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.4e-09 66.2 58 46.6
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.2e-09 65.9 67 43.3
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 4.1e-09 65.5 64 43.8
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 9.2e-09 64.3 83 41.0
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 3.5e-08 62.4 64 43.8
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 3.5e-08 62.4 64 43.8
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 4.6e-08 62.0 75 36.0
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 4.6e-08 62.0 79 36.7
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 4.6e-08 62.0 73 37.0
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 6.0e-08 61.6 60 45.0
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 1.0e-07 60.8 77 39.0
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 3.9e-07 58.9 64 42.2
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.6e-07 58.2 60 40.0
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.6e-07 58.2 60 40.0
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 6.6e-07 58.2 60 40.0
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 6.6e-07 58.2 70 35.7
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 6.6e-07 58.2 66 39.4
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.9e-06 56.6 62 40.3
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 1.9e-06 56.6 56 42.9
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.5e-06 56.2 61 36.1
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 2.5e-06 56.2 58 41.4
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 2.5e-06 56.2 78 34.6
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 2.5e-06 56.2 71 36.6
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 2.5e-06 56.2 105 31.4
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 3.3e-06 55.8 62 37.1
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 3.3e-06 55.8 86 32.6
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 5.6e-06 55.1 63 38.1
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 5.6e-06 55.1 61 36.1
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 5.6e-06 55.1 39 51.3
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 7.3e-06 54.7 104 27.9
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 7.3e-06 54.7 56 39.3
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 7.3e-06 54.7 66 36.4
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 7.3e-06 54.7 57 40.4
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 9.6e-06 54.3 88 33.0
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 9.6e-06 54.3 57 40.4


User provided reference genes

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