Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 0.0e+00 3276.9 1665 100.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 9.0e-259 898.3 1979 34.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 6.5e-249 865.5 1889 33.7
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 2.1e-178 631.3 1958 28.9
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 1.5e-168 598.6 1855 28.0
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 4.2e-163 580.5 1908 27.8
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 9.3e-163 579.3 1910 27.9
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 7.9e-162 576.2 1809 27.6
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 1.3e-161 575.5 1844 27.1
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 1.8e-161 575.1 1955 27.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 1.3e-159 568.9 1801 27.5
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 1.3e-159 568.9 1878 26.4
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 1.3e-159 568.9 1880 27.2
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 3.7e-159 567.4 1807 27.5
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 3.7e-159 567.4 1807 27.6
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 8.1e-159 566.2 1899 27.7
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 1.4e-158 565.5 1804 27.5
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 2.4e-158 564.7 1857 27.2
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 2.2e-156 558.1 1810 27.5
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 2.2e-156 558.1 1912 27.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 2.9e-156 557.8 1930 27.2
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 2.9e-156 557.8 1883 27.7
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 3.8e-156 557.4 1898 26.6
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 6.5e-156 556.6 1894 27.1
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 6.5e-156 556.6 1834 27.3
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 1.1e-155 555.8 1883 27.7
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 1.1e-155 555.8 1880 26.8
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 1.9e-155 555.1 1900 27.9
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 5.5e-155 553.5 1912 27.1
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 5.5e-155 553.5 1889 27.4
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 5.5e-155 553.5 1927 27.9
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 9.3e-155 552.7 1903 27.4
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 3.5e-154 550.8 1922 26.6
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 4.6e-154 550.4 1830 27.1
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 6.0e-154 550.1 1821 27.3
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 6.0e-154 550.1 1914 27.6
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 7.9e-154 549.7 1894 26.5
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 1.0e-153 549.3 1901 26.3
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 1.0e-153 549.3 1904 26.6
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 1.9e-152 545.0 1825 26.7
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 5.7e-152 543.5 1883 27.4
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 7.4e-152 543.1 1927 27.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 7.4e-152 543.1 1910 27.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 9.6e-152 542.7 1810 27.1
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 9.6e-152 542.7 1831 27.0
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 9.6e-152 542.7 1916 27.2
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 2.1e-151 541.6 1897 26.7
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 2.8e-151 541.2 1891 26.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 2.8e-151 541.2 1973 26.2
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 1.1e-150 539.3 1823 26.8
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 1.1e-150 539.3 1905 26.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 1.8e-150 538.5 1938 26.8
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 5.3e-150 537.0 1905 26.5
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 5.3e-150 537.0 1899 26.5
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 9.0e-150 536.2 1826 27.1
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 5.8e-149 533.5 1901 26.7
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.3e-148 532.3 1903 27.6
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 1.7e-148 531.9 1926 25.9
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 3.8e-148 530.8 1921 27.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 5.0e-148 530.4 1908 27.1
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 8.4e-148 529.6 1777 27.4
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 8.4e-148 529.6 1892 25.9
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 1.4e-147 528.9 1896 26.4
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 1.4e-147 528.9 1923 27.3
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 2.7e-146 524.6 1790 27.1
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 3.5e-146 524.2 1899 25.4
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 4.6e-146 523.9 1900 26.4
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 1.0e-145 522.7 1912 26.7
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 1.8e-145 521.9 1885 26.7
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 6.7e-145 520.0 1878 25.8
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 4.3e-144 517.3 1887 25.9
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 7.4e-144 516.5 1927 26.4
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 9.7e-144 516.2 1872 26.2
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 1.6e-143 515.4 1901 26.3
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 2.8e-143 514.6 1878 26.6
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 1.1e-142 512.7 1915 26.1
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 1.8e-142 511.9 1905 26.8
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 9.0e-142 509.6 1887 25.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 5.0e-140 503.8 1918 26.0
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 3.9e-137 494.2 1908 26.1
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 8.8e-137 493.0 1891 26.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 2.0e-136 491.9 1864 26.9
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 2.5e-136 491.5 1949 25.5
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 3.3e-136 491.1 1884 25.6
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 1.7e-135 488.8 1907 26.4
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 1.8e-134 485.3 1890 27.2
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 2.2e-132 478.4 1754 26.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 1.4e-131 475.7 1738 25.6
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 2.7e-130 471.5 1912 25.7
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 1.4e-129 469.2 1858 25.7
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 2.8e-127 461.5 1788 26.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 1.4e-126 459.1 1811 25.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 3.6e-122 444.5 1270 28.4
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 2.2e-119 435.3 1268 28.3
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 2.2e-116 425.2 1764 25.7
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 3.8e-116 424.5 1761 26.5
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 8.5e-116 423.3 1766 26.2
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 9.4e-115 419.9 1831 24.6
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 3.4e-104 384.8 1165 26.6
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.8e-90 338.6 1657 24.1
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 2.0e-85 322.4 1600 23.7
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 1.3e-79 303.1 619 34.4
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 4.7e-66 258.1 1204 24.1
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.1e-59 236.9 406 35.2
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.1e-59 236.9 251 47.8
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.6e-58 233.0 788 26.4
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-55 221.1 1065 24.3
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.2e-47 196.1 278 37.1
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.8e-44 186.4 237 41.8
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.4e-40 172.2 210 45.2
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 2.9e-39 169.1 192 47.9
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 8.4e-39 167.5 242 41.7
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.8e-36 159.8 210 40.0
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 2.1e-34 152.9 295 32.9
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.1e-30 140.6 119 52.9
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 4.6e-29 135.2 193 40.4
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 5.1e-28 131.7 233 35.6
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.1e-27 130.6 110 51.8
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.5e-27 129.4 117 49.6
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 1.3e-26 127.1 381 28.1
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.8e-26 125.2 116 47.4
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-25 122.1 219 36.1
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.9e-23 115.9 328 26.5
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-21 110.5 435 25.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 3.9e-20 105.5 308 23.7
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.3e-19 102.4 211 34.1
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 9.1e-17 94.4 177 33.3
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 5.5e-14 85.1 80 51.2
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 4.7e-13 82.0 125 40.0
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.9e-12 79.0 287 24.0
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 2.0e-08 66.6 56 50.0
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.0e-08 66.6 56 50.0
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 2.6e-08 66.2 57 49.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 5.9e-08 65.1 56 48.2
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.9e-07 62.8 101 39.6
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.1e-06 60.8 49 57.1


User provided reference genes

Program Settings