Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.2e-61 237.7 106 100.0
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.4e-19 99.8 111 48.6
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 5.8e-18 94.4 107 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 4.9e-17 91.3 107 43.9
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.1e-16 88.2 104 45.2
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.0e-14 82.0 92 43.5
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 3.9e-14 81.6 64 54.7
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.5e-13 79.7 94 40.4
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.5e-13 79.7 94 40.4
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.5e-13 79.7 71 49.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.9e-13 79.3 95 43.2
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.9e-13 79.3 94 40.4
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.3e-13 78.6 70 48.6
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 4.3e-13 78.2 70 48.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 5.6e-13 77.8 76 46.1
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 5.6e-13 77.8 90 44.4
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 7.3e-13 77.4 102 41.2
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 7.3e-13 77.4 94 40.4
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 9.5e-13 77.0 70 47.1
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 9.5e-13 77.0 70 48.6
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.5e-13 77.0 70 48.6
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.5e-13 77.0 70 48.6
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.5e-13 77.0 61 55.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 9.5e-13 77.0 70 47.1
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.2e-12 76.6 70 47.1
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.2e-12 76.6 70 47.1
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.2e-12 76.6 70 48.6
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.2e-12 76.6 61 52.5
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.6e-12 76.3 62 53.2
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.6e-12 76.3 70 48.6
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.6e-12 76.3 70 47.1
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.6e-12 76.3 70 48.6
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.6e-12 76.3 83 43.4
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.6e-12 76.3 61 52.5
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.8e-12 75.5 61 54.1
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 2.8e-12 75.5 70 48.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 2.8e-12 75.5 90 43.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 2.8e-12 75.5 62 51.6
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 3.6e-12 75.1 70 45.7
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 3.6e-12 75.1 69 46.4
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.6e-12 75.1 61 52.5
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.7e-12 74.7 83 44.6
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 4.7e-12 74.7 85 44.7
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 4.7e-12 74.7 76 48.7
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 6.2e-12 74.3 63 52.4
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.2e-12 74.3 83 44.6
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.2e-12 74.3 71 49.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 6.2e-12 74.3 86 43.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 8.1e-12 73.9 61 54.1
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 8.1e-12 73.9 71 46.5
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 8.1e-12 73.9 72 47.2
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-11 73.6 61 52.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.1e-11 73.6 71 46.5
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.4e-11 73.2 85 40.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.4e-11 73.2 86 44.2
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.4e-11 73.2 76 46.1
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-11 73.2 83 43.4
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.4e-11 73.2 61 50.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.8e-11 72.8 95 38.9
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.8e-11 72.8 63 47.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.8e-11 72.8 71 47.9
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.8e-11 72.8 65 47.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.8e-11 72.8 72 45.8
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.3e-11 72.4 72 44.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.3e-11 72.4 72 44.4
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.3e-11 72.4 73 45.2
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 3.1e-11 72.0 65 49.2
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 4.0e-11 71.6 70 45.7
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 4.0e-11 71.6 63 50.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 5.2e-11 71.2 61 50.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.2e-11 71.2 85 40.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 5.2e-11 71.2 80 45.0
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 5.2e-11 71.2 62 51.6
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 5.2e-11 71.2 62 48.4
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 5.2e-11 71.2 62 51.6
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 5.2e-11 71.2 65 46.2
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 6.8e-11 70.9 102 36.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 6.8e-11 70.9 62 48.4
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.9e-11 70.5 71 45.1
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.9e-11 70.5 71 45.1
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 1.2e-10 70.1 61 50.8
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.2e-10 70.1 76 46.1
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.2e-10 70.1 62 48.4
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.2e-10 70.1 69 47.8
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.5e-10 69.7 63 44.4
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.0e-10 69.3 85 40.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.0e-10 69.3 63 49.2
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.6e-10 68.9 63 49.2
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.6e-10 68.9 68 48.5
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.6e-10 68.9 71 45.1
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.6e-10 68.9 71 45.1
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 4.4e-10 68.2 74 45.9
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.4e-10 68.2 74 41.9
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.4e-10 68.2 60 46.7
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.4e-10 68.2 71 43.7
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.4e-10 68.2 61 47.5
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 5.8e-10 67.8 58 46.6
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 5.8e-10 67.8 74 45.9
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 5.8e-10 67.8 74 45.9
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.8e-10 67.8 61 47.5
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 7.6e-10 67.4 67 46.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.6e-10 67.4 61 45.9
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 9.9e-10 67.0 85 41.2
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 9.9e-10 67.0 62 50.0
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 1.7e-09 66.2 78 41.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.2e-09 65.9 66 43.9
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.8e-09 65.1 67 41.8
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.8e-09 65.1 104 36.5
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 4.9e-09 64.7 62 45.2
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 4.9e-09 64.7 61 45.9
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 6.4e-09 64.3 71 43.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 6.4e-09 64.3 61 45.9
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 8.4e-09 63.9 64 43.8
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.1e-08 63.5 63 44.4
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.1e-08 63.5 56 50.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.1e-08 63.5 62 46.8
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.4e-08 63.2 59 45.8
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.4e-08 62.4 89 37.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.1e-08 60.8 70 40.0
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.6e-07 59.7 52 50.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.6e-07 59.7 65 44.6
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.1e-07 59.3 70 40.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 3.5e-07 58.5 78 38.5
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 4.6e-07 58.2 78 35.9
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.0e-06 57.0 64 42.2
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.0e-06 57.0 62 43.5
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.3e-06 56.6 54 42.6
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 2.3e-06 55.8 56 46.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.3e-06 55.8 56 44.6
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 3.0e-06 55.5 55 45.5
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.0e-06 55.5 66 39.4
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 3.9e-06 55.1 73 38.4
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 3.9e-06 55.1 55 45.5
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 5.1e-06 54.7 65 43.1
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.1e-06 54.7 88 31.8


User provided reference genes

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