Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 6.4e-252 873.6 445 100.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.3e-174 614.8 444 70.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-94 351.3 423 45.4
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.0e-87 325.9 460 41.5
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.1e-86 324.7 433 42.3
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.8e-82 310.1 560 35.2
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 5.3e-81 305.8 445 40.7
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 5.9e-80 302.4 507 37.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.0e-79 301.6 442 39.6
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.3e-79 301.2 439 39.6
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.5e-79 298.9 440 39.3
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 4.2e-78 296.2 442 39.1
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 7.2e-78 295.4 437 39.4
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.1e-77 293.9 437 38.4
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 4.6e-77 292.7 416 38.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 4.6e-77 292.7 430 40.2
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 7.9e-77 292.0 442 37.3
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 3.0e-76 290.0 437 39.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 3.0e-76 290.0 432 39.1
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.9e-76 289.7 432 40.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.9e-76 289.7 422 39.1
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.1e-76 289.3 432 40.7
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 5.1e-76 289.3 432 40.0
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.5e-75 287.0 431 39.4
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.3e-74 284.6 418 39.0
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.7e-74 284.3 434 38.7
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.7e-74 284.3 434 38.7
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.2e-74 283.9 435 37.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.7e-74 283.1 438 39.3
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 4.8e-74 282.7 437 38.9
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 6.3e-74 282.3 411 39.4
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 6.3e-74 282.3 444 40.1
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 8.2e-74 282.0 433 38.1
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 8.2e-74 282.0 439 39.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.4e-73 281.2 431 39.0
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.4e-73 281.2 439 38.5
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 2.4e-73 280.4 433 40.6
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.1e-73 280.0 428 39.3
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.1e-73 280.0 416 40.1
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 3.1e-73 280.0 441 38.3
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.3e-73 279.3 438 39.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.9e-73 278.9 438 38.8
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 6.9e-73 278.9 437 38.2
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 6.9e-73 278.9 440 37.3
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 9.1e-73 278.5 441 37.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.1e-73 278.5 438 38.8
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 9.1e-73 278.5 439 38.0
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 2.6e-72 276.9 433 37.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 2.6e-72 276.9 432 38.4
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 2.6e-72 276.9 440 37.5
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.6e-72 276.9 434 38.7
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.4e-72 276.6 442 38.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.4e-72 276.6 442 38.7
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.4e-72 276.6 434 38.0
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 5.9e-72 275.8 445 39.3
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 7.7e-72 275.4 432 38.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.0e-71 275.0 435 37.0
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.0e-71 275.0 411 38.4
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.0e-71 275.0 433 37.4
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.2e-71 273.9 441 37.4
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.9e-71 273.5 411 38.4
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 3.8e-71 273.1 439 37.1
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 6.5e-71 272.3 411 38.0
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.1e-70 271.6 428 38.8
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.1e-70 271.6 445 37.3
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 1.1e-70 271.6 434 38.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.4e-70 271.2 441 37.2
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.4e-70 271.2 416 38.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.4e-70 271.2 435 37.7
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.5e-70 270.4 434 38.0
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.2e-70 270.0 439 36.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.2e-70 270.0 437 37.8
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 9.4e-70 268.5 445 36.2
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 9.4e-70 268.5 437 38.0
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 9.4e-70 268.5 438 37.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.7e-69 266.9 436 37.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 3.6e-69 266.5 434 37.8
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.8e-68 264.2 451 37.0
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.3e-68 263.8 442 37.3
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 5.1e-68 262.7 431 37.6
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 6.7e-68 262.3 425 36.2
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.0e-67 260.8 431 37.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-67 260.4 487 34.5
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 4.4e-67 259.6 431 37.1
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 5.7e-67 259.2 431 37.4
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.2e-66 257.3 436 38.3
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.7e-66 256.5 475 35.2
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 4.8e-66 256.1 417 37.9
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 6.3e-66 255.8 425 37.6
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 3.1e-65 253.4 410 37.6
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.0e-64 250.8 437 36.8
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 5.9e-64 249.2 447 36.2
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.0e-63 248.4 430 37.2
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.7e-63 247.7 521 32.1
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 6.5e-63 245.7 428 36.7
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.9e-62 244.2 435 36.8
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.5e-62 243.8 434 37.1
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.2e-62 243.4 429 37.1
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.6e-61 241.1 413 37.5
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.6e-61 241.1 413 37.5
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 3.9e-60 236.5 438 34.9
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 5.2e-60 236.1 416 36.5
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 5.2e-60 236.1 439 34.9
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.2e-56 224.9 365 37.8
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.2e-53 214.9 530 30.6
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 8.8e-52 208.8 378 37.6
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 5.4e-49 199.5 428 35.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.7e-48 197.2 384 33.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.5e-48 196.4 161 57.1
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.3e-47 194.9 159 56.0
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 7.2e-46 189.1 159 56.6
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 2.1e-45 187.6 177 53.1
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.3e-44 184.1 445 30.3
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 8.8e-44 182.2 159 54.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.5e-43 181.4 375 33.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.4e-43 179.9 174 48.3
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.1e-41 173.7 436 30.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.7e-39 167.9 155 49.7
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 2.9e-39 167.2 147 54.4
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.0e-39 166.4 157 49.0
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.1e-38 165.2 149 53.7
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.8e-29 134.0 396 28.3
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 4.7e-29 133.3 128 50.0
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.3e-26 122.5 155 40.0
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 4.6e-24 116.7 281 29.9
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 2.1e-21 107.8 100 48.0
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.0e-15 87.4 96 46.9
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 7.3e-14 82.8 107 40.2
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 4.7e-13 80.1 339 25.1
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 5.2e-12 76.6 154 35.1
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.2e-10 71.2 55 56.4
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.5e-06 57.8 52 46.2


User provided reference genes

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