Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 0.0e+00 1426.0 752 100.0
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 0.0e+00 1426.0 752 100.0
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 4.8e-300 1034.2 725 75.4
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 7.7e-149 531.9 577 52.3
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 6.5e-148 528.9 744 46.2
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.7e-137 492.3 454 57.5
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 6.5e-132 475.7 748 43.7
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 7.2e-131 472.2 612 47.5
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 2.3e-129 467.2 616 47.1
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 5.2e-129 466.1 743 41.2
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 6.8e-129 465.7 753 41.0
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-128 464.9 742 41.9
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 7.5e-128 462.2 753 41.7
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.8e-128 461.8 765 40.9
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 2.2e-127 460.7 761 41.0
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.2e-127 460.7 756 40.6
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 2.8e-127 460.3 756 41.5
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 4.8e-127 459.5 767 40.3
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 4.8e-127 459.5 617 46.4
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 6.3e-127 459.1 756 41.5
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 8.3e-127 458.8 766 41.1
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.3e-127 458.8 735 41.5
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.4e-126 458.0 747 41.9
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 1.8e-126 457.6 758 42.1
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 1.8e-126 457.6 763 41.3
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 2.4e-126 457.2 761 41.4
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 2.4e-126 457.2 762 42.0
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.4e-126 457.2 749 41.9
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.1e-126 456.8 762 42.0
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 3.1e-126 456.8 766 40.3
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 4.1e-126 456.4 757 41.5
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 4.1e-126 456.4 755 42.6
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 5.4e-126 456.1 605 47.1
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 7.0e-126 455.7 746 41.0
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.1e-126 455.3 755 40.3
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 9.1e-126 455.3 757 42.0
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.2e-125 454.9 761 40.9
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.2e-125 454.9 758 41.8
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.2e-125 454.9 751 41.0
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.6e-125 454.5 757 41.3
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 2.0e-125 454.1 655 44.3
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 2.0e-125 454.1 598 46.5
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 2.7e-125 453.8 755 40.8
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.7e-125 453.8 758 41.3
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.7e-125 453.8 760 41.4
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 3.5e-125 453.4 757 41.1
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 4.5e-125 453.0 602 46.8
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 5.9e-125 452.6 739 42.1
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.0e-124 451.8 750 40.7
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.3e-124 451.4 746 41.6
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 1.3e-124 451.4 751 40.2
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 2.3e-124 450.7 612 47.1
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.9e-124 450.3 602 46.5
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 3.8e-124 449.9 599 46.9
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 5.0e-124 449.5 746 41.3
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.6e-124 448.7 751 39.7
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 8.6e-124 448.7 751 39.9
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 1.1e-123 448.4 741 40.8
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.5e-123 448.0 752 41.6
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.5e-123 448.0 751 41.4
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.9e-123 447.6 769 39.1
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.5e-123 447.2 769 39.1
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 3.3e-123 446.8 759 40.3
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 5.5e-123 446.0 737 41.7
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 5.5e-123 446.0 765 41.2
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 7.2e-123 445.7 733 40.4
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 9.5e-123 445.3 608 46.7
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 9.5e-123 445.3 606 44.2
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.2e-122 444.9 766 40.3
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.6e-122 444.5 745 41.5
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.1e-122 444.1 753 40.1
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 2.1e-122 444.1 746 41.3
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.8e-122 443.7 737 41.5
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 3.6e-122 443.4 604 45.7
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 6.1e-122 442.6 680 42.6
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 6.1e-122 442.6 607 46.6
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 6.1e-122 442.6 622 45.3
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 8.0e-122 442.2 614 45.3
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.0e-121 441.8 743 41.0
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.0e-121 441.8 745 40.7
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.0e-121 441.8 754 41.0
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.4e-121 441.4 748 41.7
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.3e-121 440.7 604 47.4
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 3.0e-121 440.3 608 45.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.0e-121 440.3 768 39.1
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 5.2e-121 439.5 769 38.6
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 5.2e-121 439.5 763 40.1
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 6.8e-121 439.1 757 41.0
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.2e-120 438.3 627 44.8
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.5e-120 438.0 593 44.7
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 2.0e-120 437.6 767 39.2
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.6e-120 437.2 609 45.2
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.4e-120 436.8 755 40.3
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 4.4e-120 436.4 753 40.8
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 5.7e-120 436.0 742 39.5
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 7.5e-120 435.6 737 40.8
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 7.5e-120 435.6 730 40.7
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.3e-119 434.9 737 40.2
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.7e-119 434.5 599 45.9
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.7e-119 434.5 599 45.9
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.8e-119 433.7 750 38.9
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 6.3e-119 432.6 729 39.8
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 6.3e-119 432.6 744 39.4
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 8.3e-119 432.2 745 39.3
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.4e-118 431.4 735 39.7
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.8e-118 431.0 722 39.6
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.4e-118 430.6 746 39.7
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 4.1e-118 429.9 665 41.8
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 4.1e-118 429.9 595 44.9
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 4.1e-118 429.9 612 44.8
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.4e-118 429.5 432 55.3
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.0e-117 427.6 759 39.3
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 3.5e-117 426.8 596 44.5
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 5.9e-117 426.0 616 45.1
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.8e-117 425.6 498 50.4
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 7.8e-117 425.6 740 40.0
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.9e-116 423.7 607 44.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.9e-116 423.3 756 39.2
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 6.6e-116 422.5 735 39.3
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.6e-116 422.5 640 42.7
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 8.6e-116 422.2 604 46.4
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 8.6e-116 422.2 758 39.6
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.5e-115 421.4 625 43.4
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.5e-115 421.4 625 43.5
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 5.6e-115 419.5 755 39.9
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.2e-114 418.3 591 45.0
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 2.1e-114 417.5 723 40.0
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.8e-114 417.2 630 43.8
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.6e-114 416.8 630 44.0
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.7e-114 416.4 615 44.4
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 6.8e-113 412.5 760 39.1
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 8.9e-113 412.1 619 43.9
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.4e-112 410.2 675 41.3
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.7e-111 407.9 632 43.0
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 4.9e-111 406.4 791 37.2
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 7.0e-110 402.5 604 43.2
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.6e-109 401.4 657 42.3
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.0e-108 397.1 587 44.6
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 5.6e-107 392.9 794 36.8
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.6e-106 391.3 748 37.0
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.6e-106 390.2 748 37.8
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 9.8e-104 382.1 625 40.8
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 3.3e-99 367.1 367 54.8
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 2.1e-90 337.8 496 41.9
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 1.5e-88 331.6 375 51.2
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 5.6e-83 313.2 769 33.6
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.8e-81 308.1 415 45.3
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 2.6e-80 304.3 632 36.4
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 8.4e-79 299.3 423 45.2
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 4.8e-74 283.5 395 45.8
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 8.1e-74 282.7 566 37.6
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 4.0e-73 280.4 510 40.4
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 4.2e-62 243.8 306 48.0
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.2e-61 242.3 581 34.6
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 3.5e-53 214.2 226 53.5
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.1e-45 186.8 251 49.8
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 1.5e-43 182.2 185 55.7
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.3e-43 181.0 137 70.8
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.1e-29 135.2 239 36.0
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 4.7e-29 134.0 98 64.3
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 6.3e-26 123.6 181 41.4
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 3.8e-23 114.4 269 33.5
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 3.8e-23 114.4 424 27.6
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 2.8e-18 98.2 82 67.1
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.4e-17 95.1 93 55.9
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 5.4e-17 94.0 93 47.3
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 7.0e-17 93.6 146 43.2
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 2.7e-16 91.7 50 84.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.5e-15 87.0 57 68.4
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.5e-14 85.1 76 50.0
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 2.5e-14 85.1 76 50.0
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 1.6e-13 82.4 61 62.3
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 1.6e-13 82.4 61 62.3
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 3.0e-12 78.2 63 58.7
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.4e-11 74.3 364 25.5
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.1e-09 67.8 54 64.8
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 5.4e-09 67.4 57 54.4
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.9e-06 58.9 270 28.5


User provided reference genes

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