Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 0.0e+00 1271.5 672 100.0
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 3.5e-76 290.4 683 32.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.4e-61 241.1 677 31.9
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 4.1e-53 213.8 652 29.8
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 9.2e-53 212.6 686 28.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.2e-52 212.2 670 29.0
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.3e-51 208.8 674 29.2
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 3.0e-51 207.6 644 29.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 3.0e-51 207.6 679 29.2
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 5.1e-51 206.8 653 29.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 6.6e-51 206.5 661 29.3
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 5.6e-50 203.4 634 31.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.6e-49 201.8 672 29.3
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-49 200.7 652 28.1
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 4.7e-49 200.3 635 29.9
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.7e-49 200.3 662 28.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.2e-49 199.9 631 28.5
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.2e-49 199.9 670 28.8
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 8.1e-49 199.5 633 29.1
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.1e-48 197.6 632 29.0
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.1e-48 197.6 669 29.0
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.0e-48 197.2 652 28.1
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 4.0e-48 197.2 653 29.9
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 4.0e-48 197.2 655 28.4
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.8e-48 196.4 653 28.2
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.2e-47 195.7 652 27.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.2e-47 195.7 669 29.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.2e-47 195.7 658 28.9
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.5e-47 195.3 665 27.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.6e-47 194.5 643 29.4
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.6e-47 194.5 681 29.7
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 4.4e-47 193.7 667 28.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 4.4e-47 193.7 667 28.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 7.6e-47 193.0 656 29.0
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.6e-47 193.0 652 28.1
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 7.6e-47 193.0 660 29.1
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-46 192.2 653 27.3
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-46 192.2 653 27.3
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.7e-46 191.8 663 28.2
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-46 191.0 663 28.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.8e-46 190.7 663 28.1
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.8e-46 190.7 633 27.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.4e-46 189.9 676 28.7
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.4e-45 188.7 659 28.2
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-45 188.3 654 27.8
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.9e-45 188.3 677 28.7
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.4e-45 188.0 666 27.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-45 187.2 663 28.2
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.1e-45 187.2 641 27.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.1e-45 186.4 641 28.2
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 9.2e-45 186.0 651 28.1
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.2e-44 185.7 678 28.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.6e-44 185.3 637 28.9
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.7e-44 184.5 671 29.1
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.6e-44 183.7 656 28.2
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 7.8e-44 183.0 661 26.0
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.8e-44 183.0 630 27.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.0e-43 182.6 662 25.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.3e-43 182.2 668 27.5
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.3e-43 182.2 662 28.7
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.7e-43 181.8 652 27.8
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.7e-43 181.8 679 29.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.9e-43 180.6 666 26.6
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.6e-43 179.9 634 28.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 8.7e-43 179.5 652 28.7
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.9e-42 178.3 669 28.4
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.5e-42 177.9 664 26.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.3e-42 177.2 661 27.2
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 5.6e-42 176.8 637 27.6
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 9.6e-42 176.0 666 27.3
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 9.6e-42 176.0 666 27.3
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.1e-41 174.9 673 28.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 3.6e-41 174.1 643 26.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.1e-40 172.6 667 27.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.4e-40 172.2 651 26.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.8e-40 171.8 669 27.5
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.8e-40 171.8 648 27.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.8e-40 171.8 661 26.6
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 3.1e-40 171.0 648 28.5
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 6.9e-40 169.9 626 27.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.5e-39 168.7 634 27.3
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.5e-39 168.7 673 28.4
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.0e-39 168.3 650 26.2
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 5.8e-39 166.8 657 27.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-38 165.2 643 27.2
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.8e-38 164.1 650 27.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 6.4e-38 163.3 651 26.9
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.9e-37 161.8 632 26.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.2e-36 159.1 668 26.6
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.1e-36 158.3 667 27.0
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.7e-36 157.9 673 25.9
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.7e-36 157.9 673 25.9
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.7e-36 157.9 631 27.1
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-36 157.5 634 26.3
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 3.5e-36 157.5 646 28.3
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.6e-36 157.1 659 26.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.8e-36 156.4 653 29.2
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.3e-35 155.6 651 26.1
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 2.3e-35 154.8 632 28.8
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.5e-34 152.1 591 29.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.9e-34 151.8 671 26.4
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 3.6e-33 147.5 409 30.8
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.0e-32 142.9 389 30.6
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.4e-31 141.0 389 30.3
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.4e-30 136.3 394 29.4
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.1e-29 136.0 387 30.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 9.3e-29 132.9 517 27.1
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.0e-28 130.2 344 28.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.0e-27 129.4 410 26.3
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-26 124.8 696 24.1
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 4.3e-26 124.0 658 26.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 9.6e-26 122.9 629 23.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.6e-25 122.1 658 24.5
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.1e-24 119.4 629 23.4
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.4e-24 118.2 348 28.4
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.0e-23 115.2 404 26.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.2e-22 111.7 632 23.6
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 5.5e-21 107.1 416 26.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-20 104.0 674 23.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 7.9e-20 103.2 694 23.6
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.9e-20 103.2 416 25.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.3e-19 101.7 416 25.2
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 4.3e-18 97.4 185 35.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.3e-17 95.9 404 25.0
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-17 94.4 414 24.9
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 5.3e-16 90.5 625 22.9
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.2e-15 89.4 163 35.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-14 86.3 381 26.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-14 85.9 435 25.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-14 85.9 368 26.1
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.3e-14 85.9 368 26.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 8.4e-14 83.2 381 26.2
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-13 81.6 415 24.3
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 5.1e-11 73.9 225 29.3
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 5.7e-10 70.5 154 34.4
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.1e-08 64.3 426 22.3
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.3e-08 63.9 111 34.2
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.7e-06 58.9 149 28.9
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 8.5e-06 56.6 119 33.6


User provided reference genes

Program Settings