Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.1e-237 823.5 416 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 2.4e-160 569.3 345 78.6
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 3.7e-153 545.4 363 72.7
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.6e-148 530.0 364 71.4
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 4.7e-148 528.5 342 73.4
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 6.1e-148 528.1 342 74.0
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.0e-147 527.3 364 70.6
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 1.0e-147 527.3 342 73.4
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 5.2e-147 525.0 360 70.8
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 5.2e-147 525.0 348 71.8
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 6.8e-147 524.6 391 66.5
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 4.4e-146 521.9 368 67.9
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 5.7e-146 521.5 371 69.8
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 7.5e-146 521.2 342 72.5
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 7.5e-146 521.2 342 72.2
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 9.8e-146 520.8 372 68.8
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 1.3e-145 520.4 360 70.6
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.3e-145 520.4 373 67.3
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.7e-145 520.0 378 66.1
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 2.2e-145 519.6 362 68.5
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.9e-145 519.2 360 70.3
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 3.7e-145 518.8 371 67.7
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 4.9e-145 518.5 342 72.5
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 4.9e-145 518.5 348 70.7
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 6.4e-145 518.1 342 71.9
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 8.3e-145 517.7 364 69.0
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.1e-144 517.3 350 70.6
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 1.4e-144 516.9 366 68.6
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.8e-144 516.5 359 69.4
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 1.8e-144 516.5 350 71.1
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.8e-144 516.5 365 69.0
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.4e-144 516.2 350 71.1
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 2.4e-144 516.2 366 68.6
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 3.2e-144 515.8 350 69.7
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 4.1e-144 515.4 368 67.1
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 5.4e-144 515.0 377 67.4
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.6e-143 513.5 342 71.1
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.6e-143 513.5 408 64.7
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 1.6e-143 513.5 359 69.9
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.6e-143 513.5 360 68.1
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 2.0e-143 513.1 360 69.2
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.5e-143 512.3 360 68.9
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.5e-143 512.3 407 63.6
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 3.5e-143 512.3 360 68.9
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 3.5e-143 512.3 357 69.2
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 4.6e-143 511.9 377 66.8
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 4.6e-143 511.9 342 71.1
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 7.8e-143 511.1 342 71.1
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 7.8e-143 511.1 341 71.6
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 1.3e-142 510.4 374 66.3
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.7e-142 510.0 393 64.6
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 2.3e-142 509.6 366 66.9
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 3.0e-142 509.2 404 63.6
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 5.0e-142 508.4 367 66.8
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.5e-141 506.9 347 68.6
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.5e-141 506.9 395 64.6
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 4.3e-141 505.4 357 68.6
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 4.3e-141 505.4 342 70.8
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 4.3e-141 505.4 342 69.6
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 4.7e-140 501.9 395 64.6
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 6.2e-140 501.5 342 69.0
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.4e-139 500.4 413 62.2
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.8e-139 500.0 365 66.6
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 2.3e-139 499.6 339 70.2
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 2.3e-139 499.6 350 70.0
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 3.1e-139 499.2 357 67.8
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 4.0e-139 498.8 339 70.2
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 4.0e-139 498.8 339 70.2
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 5.2e-139 498.4 339 70.2
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 5.2e-139 498.4 391 62.7
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 8.9e-139 497.7 342 69.0
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 1.2e-138 497.3 342 69.3
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.2e-138 497.3 352 68.2
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 1.2e-138 497.3 342 69.3
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 4.4e-138 495.4 356 66.9
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 7.5e-138 494.6 342 68.7
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 7.5e-138 494.6 356 68.0
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 2.9e-137 492.7 342 68.4
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 6.4e-137 491.5 357 67.2
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 8.3e-137 491.1 358 67.6
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 8.3e-137 491.1 342 68.1
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.4e-136 490.3 346 68.2
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 2.4e-136 489.6 399 63.2
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 3.9e-134 482.3 329 69.6
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 6.6e-134 481.5 342 68.4
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 9.5e-133 477.6 395 60.0
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.6e-132 476.9 380 62.9
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 2.1e-132 476.5 355 66.2
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 8.1e-132 474.6 361 65.7
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.1e-131 474.2 342 67.0
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 2.6e-130 469.5 372 62.1
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.7e-129 466.8 367 62.7
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 1.1e-128 464.2 339 66.4
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.2e-128 462.6 339 68.1
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 9.2e-128 461.1 362 63.3
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.1e-127 459.9 360 63.9
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.9e-126 455.7 369 62.9
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 4.3e-125 452.2 349 64.8
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 6.2e-124 448.4 364 63.5
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.8e-123 446.8 298 72.5
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 2.9e-121 439.5 438 54.8
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 7.8e-119 431.4 316 68.0
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.9e-117 426.8 268 75.4
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.3e-117 424.9 365 58.6
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 3.2e-112 409.5 373 57.6
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 4.6e-111 405.6 360 57.8
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 1.3e-108 397.5 375 56.8
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 2.5e-101 373.2 360 54.2
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 4.0e-99 365.9 252 69.8
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 2.6e-98 363.2 233 73.8
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.5e-85 320.1 212 73.6
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.5e-80 303.5 203 72.9
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 3.2e-80 303.1 225 67.1
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.0e-78 298.1 203 70.4
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 6.3e-76 288.9 188 71.8
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.7e-68 264.2 279 49.8
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 1.7e-49 201.1 427 33.7
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 1.4e-38 164.9 121 70.2
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.8e-33 146.7 101 66.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.5e-32 144.8 116 60.3
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 1.9e-32 144.4 245 36.7
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.5e-32 144.1 85 78.8
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 8.0e-23 112.5 74 66.2
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 3.0e-17 94.0 164 36.0
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 4.3e-16 90.1 74 55.4
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.2e-14 83.2 74 62.2
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 8.9e-14 82.4 113 45.1
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.4e-13 80.5 113 44.2
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 7.5e-13 79.3 44 77.3
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.2e-07 62.0 108 38.0
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 2.1e-07 61.2 54 61.1
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 3.1e-06 57.4 98 33.7


User provided reference genes

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