Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 0.0e+00 2502.2 1399 100.0
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 0.0e+00 1687.2 1399 69.5
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 6.1e-192 676.0 1255 36.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.1e-188 665.2 1267 38.9
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.0e-186 656.4 1285 36.2
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.5e-177 628.2 1247 35.6
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 1.4e-164 585.1 1227 34.6
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.6e-160 570.5 1320 33.6
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 3.6e-160 570.5 1138 35.9
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 4.7e-160 570.1 1230 33.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 6.2e-160 569.7 1197 33.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 4.9e-157 560.1 1217 34.6
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 1.4e-156 558.5 1200 33.0
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 4.2e-156 557.0 1225 33.6
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.6e-155 555.1 1226 32.6
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 3.5e-155 553.9 1221 34.1
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 3.5e-155 553.9 1212 34.6
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 4.6e-155 553.5 1232 33.4
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 7.8e-155 552.7 1282 33.5
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 1.0e-154 552.4 1214 33.3
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 1.3e-154 552.0 1225 34.0
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 1.7e-154 551.6 1212 33.7
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 5.1e-154 550.1 1232 34.5
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 8.7e-154 549.3 1233 34.5
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 8.7e-154 549.3 1297 33.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 2.5e-153 547.7 1286 33.6
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 4.3e-153 547.0 1218 33.3
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 1.2e-152 545.4 1296 33.5
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 2.1e-152 544.7 1235 34.3
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 4.7e-152 543.5 1254 32.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 8.1e-152 542.7 1299 34.0
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 1.4e-151 542.0 1222 32.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.4e-151 542.0 1246 32.9
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 1.8e-151 541.6 1272 33.6
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 4.0e-151 540.4 1248 34.1
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 2.0e-150 538.1 1212 33.9
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 2.6e-150 537.7 1209 32.9
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 4.4e-150 537.0 1231 33.2
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 4.4e-150 537.0 1205 33.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 5.8e-150 536.6 1225 34.2
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 9.9e-150 535.8 1199 35.2
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 1.3e-149 535.4 1227 33.7
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 1.3e-149 535.4 1202 34.4
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 1.3e-149 535.4 1350 33.9
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 1.7e-149 535.0 1198 34.6
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.9e-149 534.3 1246 32.7
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 2.9e-149 534.3 1192 34.0
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 3.8e-149 533.9 1195 35.1
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 1.1e-148 532.3 1304 33.0
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.4e-148 531.9 1240 33.1
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 1.9e-148 531.6 1198 35.5
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 2.4e-148 531.2 1309 33.2
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 4.2e-148 530.4 1233 33.7
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 4.2e-148 530.4 1225 31.6
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 7.1e-148 529.6 1204 33.4
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 9.3e-148 529.3 1233 32.3
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 2.1e-147 528.1 1276 34.6
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.7e-146 525.0 1224 33.7
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 2.3e-146 524.6 1244 34.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 5.1e-146 523.5 1239 33.6
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 8.7e-146 522.7 1202 32.9
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 1.1e-145 522.3 1235 34.6
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 9.6e-145 519.2 1201 32.7
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 9.6e-145 519.2 1237 33.1
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 1.1e-143 515.8 1223 33.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 1.4e-143 515.4 1263 34.4
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 1.4e-143 515.4 1233 34.5
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 6.9e-143 513.1 1246 33.3
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 1.2e-142 512.3 1235 32.5
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 2.0e-142 511.5 1251 34.9
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 2.0e-142 511.5 1251 34.9
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.0e-142 511.5 1243 31.5
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 3.4e-142 510.8 1246 34.6
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.7e-141 508.4 1251 33.6
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.7e-141 508.4 1200 33.8
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 1.7e-141 508.4 1258 31.9
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 1.7e-141 508.4 1211 34.6
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 2.9e-141 507.7 1217 32.6
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 4.9e-141 506.9 1171 33.6
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 6.4e-141 506.5 1224 32.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.4e-141 506.1 1260 32.8
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 1.4e-140 505.4 1325 31.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 1.2e-139 502.3 1174 31.8
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.6e-139 501.9 1228 32.9
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.1e-139 501.5 1227 32.8
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 4.6e-139 500.4 1145 32.4
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 4.6e-139 500.4 1244 32.1
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 7.9e-139 499.6 1261 32.3
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 1.0e-138 499.2 1226 33.9
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 1.3e-138 498.8 1170 34.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 1.8e-138 498.4 1238 33.4
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 5.1e-138 496.9 1240 32.5
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 5.1e-138 496.9 1240 32.5
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 4.3e-137 493.8 1145 33.7
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 9.6e-137 492.7 1307 32.9
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 2.8e-136 491.1 1310 32.2
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 4.8e-136 490.3 1256 32.7
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 4.8e-136 490.3 1212 30.9
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 2.0e-134 485.0 1218 31.8
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 7.6e-134 483.0 1237 32.3
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 4.9e-133 480.3 1365 32.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 7.1e-132 476.5 1237 31.4
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 1.9e-129 468.4 1245 31.7
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 2.5e-129 468.0 1118 33.5
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 7.4e-129 466.5 1240 31.0
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 4.9e-125 453.8 1168 32.4
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 1.1e-124 452.6 1198 30.2
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 6.7e-122 443.4 1237 30.2
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 7.4e-121 439.9 1209 30.5
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.3e-120 436.8 1170 29.7
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 1.5e-118 432.2 1195 30.5
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 5.9e-118 430.3 1205 32.0
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 1.3e-112 412.5 1210 28.7
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 4.7e-107 394.0 1068 33.3
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 4.8e-96 357.5 575 36.9
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.6e-94 352.4 768 33.6
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.3e-80 306.2 964 30.1
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 8.6e-69 266.9 1242 28.2
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.6e-57 228.8 401 34.9
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 9.8e-57 226.9 1228 23.7
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 2.3e-53 215.7 558 29.0
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 1.9e-47 196.1 533 31.0
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.6e-46 193.0 1374 26.7
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.9e-40 171.4 854 25.4
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.9e-39 169.5 492 31.3
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 9.0e-34 150.6 477 29.4
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 9.9e-33 147.1 706 25.9
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 6.9e-26 124.4 288 30.9
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.3e-21 109.4 427 27.9
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.1e-20 107.1 144 38.9
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.1e-20 107.1 144 38.9
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 5.6e-20 104.8 248 29.8
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-15 90.5 201 33.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 6.7e-13 81.3 296 27.0
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.1e-10 72.4 61 60.7


User provided reference genes

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