Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 5.7e-152 540.8 257 100.0
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 2.3e-84 316.2 251 58.2
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 3.6e-82 308.9 267 56.6
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 3.9e-76 288.9 250 53.2
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 6.6e-76 288.1 249 52.6
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 8.6e-76 287.7 248 52.4
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 1.5e-75 287.0 250 52.8
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 1.9e-75 286.6 250 53.6
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 5.6e-75 285.0 251 53.4
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 9.5e-75 284.3 249 51.8
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.1e-74 283.1 249 50.6
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 3.6e-74 282.3 251 53.0
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 8.1e-74 281.2 250 52.4
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 8.1e-74 281.2 250 52.0
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.1e-73 280.8 250 52.4
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 1.1e-73 280.8 250 51.2
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.1e-73 280.8 250 52.8
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.4e-73 280.4 250 52.0
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 2.3e-73 279.6 249 51.0
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 6.8e-73 278.1 250 51.6
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 6.8e-73 278.1 250 50.4
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 1.5e-72 276.9 251 50.2
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.5e-72 276.9 250 52.4
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 2.6e-72 276.2 250 51.2
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 2.6e-72 276.2 251 52.6
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 5.8e-72 275.0 250 52.0
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 7.6e-72 274.6 250 52.0
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 7.6e-72 274.6 251 53.0
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 9.9e-72 274.2 250 51.2
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 9.9e-72 274.2 250 51.2
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 9.9e-72 274.2 250 51.2
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 9.9e-72 274.2 250 52.0
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.3e-71 273.9 251 53.0
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.7e-71 273.5 251 53.0
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.9e-71 272.7 250 50.0
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.9e-71 272.7 250 50.0
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.9e-71 272.7 250 50.0
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.9e-71 272.7 250 51.2
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.9e-71 272.7 250 50.8
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 3.8e-71 272.3 251 52.6
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 4.9e-71 271.9 251 52.6
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 4.9e-71 271.9 250 50.0
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 6.4e-71 271.6 250 50.4
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 8.4e-71 271.2 250 50.4
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.1e-70 270.8 252 50.4
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.1e-70 270.8 250 50.8
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.1e-70 270.8 250 50.8
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 1.4e-70 270.4 251 52.2
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.4e-70 270.4 250 49.6
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 1.9e-70 270.0 252 50.0
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 3.2e-70 269.2 250 52.0
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 3.2e-70 269.2 250 49.6
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 4.1e-70 268.9 250 51.2
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.4e-70 268.5 250 50.0
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.1e-70 268.1 250 50.8
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 9.2e-70 267.7 249 49.8
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 9.2e-70 267.7 251 50.2
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 2.1e-69 266.5 250 49.6
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 1.0e-68 264.2 250 48.4
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 1.3e-68 263.8 250 48.8
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 3.9e-68 262.3 250 50.0
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 5.1e-68 261.9 250 47.6
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 6.6e-68 261.5 252 47.2
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 1.5e-67 260.4 249 48.6
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 2.5e-67 259.6 252 48.4
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 9.6e-67 257.7 252 47.2
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 1.6e-66 256.9 250 50.0
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 2.1e-66 256.5 252 48.8
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 2.8e-66 256.1 254 46.9
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 2.8e-66 256.1 250 46.8
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 2.8e-66 256.1 250 49.2
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 6.2e-66 255.0 250 48.8
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 8.1e-66 254.6 252 47.2
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 1.1e-65 254.2 252 48.4
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 1.1e-65 254.2 252 48.4
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 1.1e-65 254.2 252 48.4
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 1.1e-65 254.2 252 48.4
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 1.1e-65 254.2 252 48.4
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 1.1e-65 254.2 252 48.4
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 2.4e-65 253.1 241 46.5
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 5.2e-65 251.9 252 46.4
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 8.9e-65 251.1 252 48.4
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 8.9e-65 251.1 252 47.6
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 2.0e-64 250.0 252 46.4
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 3.4e-64 249.2 249 46.6
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 7.6e-64 248.1 252 47.6
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 7.6e-64 248.1 257 46.7
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 9.9e-64 247.7 249 46.6
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.3e-63 247.3 253 46.6
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 2.2e-63 246.5 252 47.6
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 3.8e-63 245.7 249 45.0
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 3.8e-63 245.7 250 48.4
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 3.8e-63 245.7 252 45.6
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 2.4e-62 243.0 250 44.8
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 4.2e-62 242.3 250 46.8
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 5.4e-62 241.9 252 45.6
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 5.4e-62 241.9 250 44.0
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 5.4e-62 241.9 252 46.8
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 1.6e-61 240.4 232 48.7
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 1.6e-61 240.4 252 44.4
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 2.3e-60 236.5 252 45.2
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 1.5e-59 233.8 250 46.0
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 1.9e-59 233.4 241 46.9
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 6.9e-57 224.9 203 49.8
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 3.8e-55 219.2 262 41.6
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 6.0e-53 211.8 251 43.0
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 7.9e-53 211.5 251 43.8
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 5.3e-41 172.2 266 39.1
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.0e-36 156.4 154 43.5
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 2.5e-35 153.3 135 53.3
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 6.3e-34 148.7 287 33.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 1.4e-30 137.5 111 56.8
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 2.2e-26 123.6 104 56.7
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.7e-18 97.4 95 48.4
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 1.3e-15 87.8 71 49.3
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.2e-15 87.0 100 45.0
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 9.7e-11 71.6 150 30.7
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.7e-10 70.9 126 34.1
Mapoly0033s0082 Marchantia polymorpha HOM05D027965 ORTHO05D048753 1.8e-09 67.4 98 35.7
DCAR_013619 Daucus carota HOM05D007529 ORTHO05D007451 4.5e-08 62.8 120 34.2
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.0e-07 61.6 41 63.4
unitig_899.g15375 Utricularia gibba HOM05D001305 ORTHO05D001934 1.0e-07 61.6 121 29.8
AagrBONN_evm.TU.Sc2ySwM_368.1069 Anthoceros agrestis HOM05D027965 ORTHO05D007451 1.3e-07 61.2 107 33.6
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.7e-07 60.8 58 44.8
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 2.2e-07 60.5 117 29.9
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 2.9e-07 60.1 56 44.6
Migut.D02365 Erythranthe guttata HOM05D001305 ORTHO05D001934 8.5e-07 58.5 103 34.0
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 1.5e-06 57.8 106 34.0
QL02p027135 Quercus lobata HOM05D001305 ORTHO05D007147 9.4e-06 55.1 119 29.4


User provided reference genes

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