Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.0e-24 115.2 66 100.0
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.4e-14 80.5 59 78.0
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 9.2e-14 79.7 54 83.3
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 3.5e-13 77.8 54 81.5
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.5e-13 77.8 54 79.6
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 4.5e-13 77.4 62 75.8
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.7e-12 75.5 55 76.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 3.9e-12 74.3 54 77.8
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 8.6e-12 73.2 67 73.1
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 8.6e-12 73.2 54 75.9
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 1.5e-11 72.4 50 84.0
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.5e-11 71.6 52 82.7
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 3.3e-11 71.2 64 70.3
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 3.3e-11 71.2 55 78.2
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 3.3e-11 71.2 55 78.2
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 3.3e-11 71.2 56 78.6
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 4.3e-11 70.9 53 79.2
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 4.3e-11 70.9 55 80.0
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 5.6e-11 70.5 52 78.8
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.6e-11 70.5 53 79.2
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 5.6e-11 70.5 52 80.8
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 5.6e-11 70.5 56 73.2
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 7.3e-11 70.1 68 69.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 9.5e-11 69.7 63 71.4
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.5e-11 69.7 49 81.6
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 1.2e-10 69.3 52 80.8
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.6e-10 68.9 55 78.2
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.8e-10 68.2 69 69.6
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 3.6e-10 67.8 50 84.0
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 4.7e-10 67.4 66 66.7
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 4.7e-10 67.4 64 68.8
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 4.7e-10 67.4 53 77.4
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 6.1e-10 67.0 69 65.2
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 6.1e-10 67.0 53 73.6
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 8.0e-10 66.6 57 73.7
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 8.0e-10 66.6 57 73.7
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 8.0e-10 66.6 56 69.6
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 8.0e-10 66.6 66 65.2
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.0e-09 66.2 69 65.2
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.8e-09 65.5 60 70.0
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.8e-09 65.5 48 77.1
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.8e-09 65.5 65 66.2
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.8e-09 65.5 54 75.9
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 2.3e-09 65.1 51 76.5
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 3.1e-09 64.7 53 75.5
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.1e-09 64.7 68 66.2
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 4.0e-09 64.3 57 68.4
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 4.0e-09 64.3 65 63.1
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 4.0e-09 64.3 52 75.0
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 5.2e-09 63.9 50 80.0
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 5.2e-09 63.9 46 80.4
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 5.2e-09 63.9 56 69.6
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 6.8e-09 63.5 48 77.1
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 6.8e-09 63.5 48 77.1
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 8.9e-09 63.2 55 70.9
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.2e-08 62.8 49 79.6
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.2e-08 62.8 56 67.9
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.2e-08 62.8 48 77.1
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.2e-08 62.8 56 67.9
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.2e-08 62.8 53 71.7
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.5e-08 62.4 48 79.2
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 2.0e-08 62.0 46 80.4
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 2.6e-08 61.6 52 75.0
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.4e-08 61.2 49 77.6
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.4e-08 61.2 50 74.0
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 3.4e-08 61.2 66 60.6
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 4.4e-08 60.8 48 77.1
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 4.4e-08 60.8 47 78.7
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 4.4e-08 60.8 48 75.0
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.8e-08 60.5 48 79.2
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 5.8e-08 60.5 48 75.0
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 7.5e-08 60.1 47 76.6
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 9.8e-08 59.7 46 80.4
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 9.8e-08 59.7 49 73.5
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 9.8e-08 59.7 49 73.5
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.3e-07 59.3 47 76.6
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.3e-07 59.3 47 78.7
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.7e-07 58.9 53 67.9
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 2.2e-07 58.5 45 77.8
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 2.9e-07 58.2 54 66.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 2.9e-07 58.2 47 78.7
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 2.9e-07 58.2 47 78.7
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 2.9e-07 58.2 47 78.7
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.9e-07 58.2 48 75.0
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 2.9e-07 58.2 47 76.6
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 3.7e-07 57.8 47 76.6
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 4.9e-07 57.4 51 72.5
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 8.3e-07 56.6 48 70.8
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 8.3e-07 56.6 45 75.6
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.1e-06 56.2 54 64.8
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 1.1e-06 56.2 42 73.8
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.4e-06 55.8 56 62.5
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.4e-06 55.8 49 71.4
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 2.4e-06 55.1 61 59.0
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 3.2e-06 54.7 42 71.4
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 3.2e-06 54.7 46 73.9
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 4.1e-06 54.3 44 77.3
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 4.1e-06 54.3 44 79.5
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 4.1e-06 54.3 54 64.8
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 5.4e-06 53.9 47 70.2
Haze_11612 Corylus avellana HOM05D005458 ORTHO05D005672 5.4e-06 53.9 31 90.3
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.4e-06 53.9 44 75.0
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 5.4e-06 53.9 51 66.7
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 7.0e-06 53.5 43 76.7
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 7.0e-06 53.5 53 64.2
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 9.2e-06 53.1 51 64.7
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 9.2e-06 53.1 66 59.1
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 9.2e-06 53.1 54 64.8


User provided reference genes

Program Settings