Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.6e-64 247.3 132 100.0
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.8e-59 231.5 133 92.5
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 83.3
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 4.3e-47 191.4 129 79.1
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 1.3e-40 169.9 136 71.3
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 2.3e-40 169.1 131 72.5
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.3e-40 169.1 130 70.8
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.3e-40 169.1 130 70.8
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 3.0e-40 168.7 124 71.8
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 3.9e-40 168.3 126 72.2
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 8.7e-40 167.2 130 71.5
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 1.1e-39 166.8 124 71.0
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.1e-39 166.8 130 69.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.1e-39 166.8 130 70.8
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.1e-39 166.8 130 71.5
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 1.5e-39 166.4 132 68.2
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.5e-39 166.4 131 71.0
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.5e-39 166.4 131 71.0
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.5e-39 166.4 130 70.8
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 2.5e-39 165.6 130 70.8
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 2.5e-39 165.6 124 70.2
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 3.3e-39 165.2 130 68.5
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 3.3e-39 165.2 131 69.5
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.3e-39 165.2 125 69.6
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 4.3e-39 164.9 130 68.5
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 4.3e-39 164.9 124 71.0
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.3e-39 164.9 126 69.8
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 4.3e-39 164.9 130 70.0
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 5.7e-39 164.5 130 68.5
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 7.4e-39 164.1 130 70.8
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 7.4e-39 164.1 123 69.1
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.3e-38 163.3 126 69.8
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 1.3e-38 163.3 124 69.4
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 1.3e-38 163.3 124 69.4
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 1.3e-38 163.3 124 69.4
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 1.3e-38 163.3 124 69.4
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.3e-38 163.3 124 70.2
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 1.6e-38 162.9 126 69.0
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.6e-38 162.9 132 68.2
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 1.6e-38 162.9 132 68.2
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.6e-38 162.9 134 67.2
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.6e-38 162.9 132 68.2
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.6e-38 162.9 132 66.7
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 1.6e-38 162.9 126 69.0
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.2e-38 162.5 134 67.2
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 2.2e-38 162.5 127 66.1
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.8e-38 162.2 124 68.5
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.7e-38 161.8 130 69.2
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 3.7e-38 161.8 125 70.4
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 3.7e-38 161.8 130 69.2
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.7e-38 161.8 126 69.0
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.7e-38 161.8 126 69.8
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 4.8e-38 161.4 130 68.5
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 4.8e-38 161.4 134 66.4
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 4.8e-38 161.4 132 65.9
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 4.8e-38 161.4 127 69.3
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 6.3e-38 161.0 122 68.9
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 8.2e-38 160.6 129 65.9
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 8.2e-38 160.6 123 69.1
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.1e-37 160.2 130 66.9
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.4e-37 159.8 132 67.4
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.4e-37 159.8 124 67.7
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.8e-37 159.5 130 66.2
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.8e-37 159.5 127 70.1
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 2.4e-37 159.1 127 68.5
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.4e-37 159.1 119 68.1
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 2.4e-37 159.1 134 64.9
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 3.1e-37 158.7 129 65.9
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 3.1e-37 158.7 122 68.9
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 5.3e-37 157.9 131 65.6
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 5.3e-37 157.9 131 66.4
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 5.3e-37 157.9 131 66.4
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 5.3e-37 157.9 131 66.4
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 5.3e-37 157.9 132 63.6
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 5.3e-37 157.9 131 64.9
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 6.9e-37 157.5 125 67.2
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 6.9e-37 157.5 130 65.4
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 6.9e-37 157.5 119 67.2
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 6.9e-37 157.5 133 69.2
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 6.9e-37 157.5 104 77.9
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 6.9e-37 157.5 126 67.5
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 9.0e-37 157.1 130 66.9
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 9.0e-37 157.1 130 66.9
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 9.0e-37 157.1 134 70.1
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 9.0e-37 157.1 126 66.7
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 9.0e-37 157.1 130 66.2
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 1.2e-36 156.8 125 68.0
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.2e-36 156.8 126 67.5
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.5e-36 156.4 130 66.2
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.5e-36 156.4 130 66.2
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.5e-36 156.4 136 65.4
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 1.5e-36 156.4 135 67.4
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.0e-36 156.0 125 69.6
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.0e-36 156.0 125 67.2
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.0e-36 156.0 129 65.9
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.6e-36 155.6 134 67.2
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.6e-36 155.6 128 67.2
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 3.4e-36 155.2 121 66.9
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 3.4e-36 155.2 125 67.2
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 3.4e-36 155.2 125 67.2
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 3.4e-36 155.2 125 67.2
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 3.4e-36 155.2 125 67.2
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 3.4e-36 155.2 130 66.2
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 4.5e-36 154.8 127 65.4
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 4.5e-36 154.8 134 64.2
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 5.9e-36 154.5 135 64.4
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 5.9e-36 154.5 129 65.1
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 7.6e-36 154.1 132 65.2
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 1.0e-35 153.7 124 66.1
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.0e-35 153.7 130 64.6
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.3e-35 153.3 124 68.5
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 1.3e-35 153.3 131 65.6
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 1.3e-35 153.3 124 67.7
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.3e-35 153.3 132 68.2
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.7e-35 152.9 127 66.9
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 2.2e-35 152.5 135 65.9
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 2.9e-35 152.1 125 66.4
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 3.8e-35 151.8 121 65.3
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.8e-35 151.8 123 65.9
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 6.5e-35 151.0 134 64.2
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 6.5e-35 151.0 133 63.2
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 6.5e-35 151.0 130 62.3
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 8.5e-35 150.6 88 83.0
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 8.5e-35 150.6 133 63.2
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 8.5e-35 150.6 120 66.7
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 8.5e-35 150.6 123 62.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 1.1e-34 150.2 133 69.2
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.1e-34 150.2 131 65.6
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 3.2e-34 148.7 130 61.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.2e-34 148.7 130 61.5
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 7.2e-34 147.5 125 63.2
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 7.2e-34 147.5 109 68.8
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 9.3e-34 147.1 127 64.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 2.1e-33 146.0 135 60.7
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.3e-32 143.3 131 61.1
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 5.3e-29 131.3 123 58.5
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.5e-26 122.5 78 79.5
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 5.5e-26 121.3 77 80.5
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 2.1e-25 119.4 129 51.9
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 3.0e-24 115.5 78 76.9
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 7.7e-20 100.9 100 58.0
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 1.9e-10 69.7 47 74.5
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.2e-09 67.0 73 57.5
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 3.0e-08 62.4 87 44.8
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 4.4e-07 58.5 81 40.7


User provided reference genes

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