Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 3.4e-126 454.9 211 100.0
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 4.4e-25 119.0 113 50.4
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 9.7e-25 117.9 111 51.4
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 1.7e-24 117.1 114 52.6
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 2.2e-24 116.7 114 52.6
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 2.2e-24 116.7 114 52.6
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 4.8e-24 115.5 110 49.1
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 8.2e-24 114.8 113 47.8
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 8.2e-24 114.8 106 50.0
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 8.2e-24 114.8 113 48.7
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 8.2e-24 114.8 113 48.7
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 1.1e-23 114.4 110 52.7
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 1.4e-23 114.0 110 52.7
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 1.4e-23 114.0 106 49.1
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 1.8e-23 113.6 114 50.9
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.8e-23 113.6 110 50.0
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.8e-23 113.6 112 49.1
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 1.8e-23 113.6 103 51.5
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.8e-23 113.6 115 53.0
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 2.4e-23 113.2 111 48.6
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 2.4e-23 113.2 110 50.9
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 3.1e-23 112.8 110 52.7
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 3.1e-23 112.8 110 49.1
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 3.1e-23 112.8 105 51.4
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 5.3e-23 112.1 101 50.5
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 7.0e-23 111.7 110 50.0
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 7.0e-23 111.7 99 54.5
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 7.0e-23 111.7 99 53.5
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 9.1e-23 111.3 113 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 9.1e-23 111.3 107 48.6
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 9.1e-23 111.3 105 48.6
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 1.2e-22 110.9 107 50.5
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 1.5e-22 110.5 110 48.2
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 1.5e-22 110.5 106 50.0
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 1.5e-22 110.5 115 49.6
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 1.5e-22 110.5 105 52.4
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 2.0e-22 110.2 110 48.2
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 2.0e-22 110.2 113 45.1
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 2.0e-22 110.2 105 50.5
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 2.0e-22 110.2 107 49.5
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 2.6e-22 109.8 115 45.2
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 2.6e-22 109.8 105 49.5
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 2.6e-22 109.8 105 48.6
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 2.6e-22 109.8 101 51.5
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.6e-22 109.8 101 51.5
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 2.6e-22 109.8 110 50.0
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 2.6e-22 109.8 95 53.7
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 3.5e-22 109.4 101 50.5
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 3.5e-22 109.4 111 45.0
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 3.5e-22 109.4 112 49.1
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 4.5e-22 109.0 110 50.0
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 4.5e-22 109.0 105 48.6
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 4.5e-22 109.0 104 50.0
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 4.5e-22 109.0 95 51.6
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 4.5e-22 109.0 112 44.6
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 7.7e-22 108.2 99 51.5
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 7.7e-22 108.2 99 50.5
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 7.7e-22 108.2 110 47.3
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.0e-21 107.8 101 50.5
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 1.0e-21 107.8 103 50.5
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 1.0e-21 107.8 111 45.0
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 1.0e-21 107.8 101 48.5
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 1.0e-21 107.8 110 47.3
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-21 107.5 99 50.5
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-21 107.5 99 50.5
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-21 107.5 99 50.5
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 1.3e-21 107.5 110 48.2
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 1.3e-21 107.5 111 45.0
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 1.3e-21 107.5 111 45.0
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 2.2e-21 106.7 109 48.6
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 2.9e-21 106.3 107 47.7
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 2.9e-21 106.3 99 51.5
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 2.9e-21 106.3 103 48.5
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 3.8e-21 105.9 102 52.0
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 5.0e-21 105.5 99 49.5
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 5.0e-21 105.5 102 49.0
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 5.0e-21 105.5 105 45.7
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 6.5e-21 105.1 101 48.5
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 6.5e-21 105.1 99 49.5
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 1.1e-20 104.4 106 47.2
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 1.1e-20 104.4 106 48.1
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 1.9e-20 103.6 105 47.6
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 1.9e-20 103.6 117 43.6
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 1.9e-20 103.6 102 51.0
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 1.9e-20 103.6 112 45.5
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 1.9e-20 103.6 103 44.7
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.9e-20 103.6 106 46.2
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 2.5e-20 103.2 105 46.7
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 3.2e-20 102.8 110 49.1
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 4.2e-20 102.4 113 45.1
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 4.2e-20 102.4 99 47.5
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 4.2e-20 102.4 100 50.0
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 9.4e-20 101.3 105 46.7
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 1.2e-19 100.9 104 46.2
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 2.7e-19 99.8 106 45.3
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 2.7e-19 99.8 105 45.7
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 2.7e-19 99.8 105 45.7
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 6.1e-19 98.6 102 47.1
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 6.7e-18 95.1 105 45.7
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 8.8e-18 94.7 98 45.9
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 1.1e-17 94.4 91 50.5
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 1.5e-17 94.0 76 57.9
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 7.5e-17 91.7 91 50.5
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 1.7e-16 90.5 66 56.1
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 2.2e-16 90.1 91 48.4
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 4.8e-16 89.0 65 61.5
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 4.8e-16 89.0 61 62.3
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 6.3e-16 88.6 136 37.5
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 8.2e-16 88.2 93 49.5
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 1.1e-15 87.8 94 46.8
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 2.6e-14 83.2 116 35.3
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 2.2e-13 80.1 85 43.5
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 2.1e-11 73.6 84 45.2
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 4.4e-09 65.9 75 44.0
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 1.7e-08 63.9 75 44.0
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 6.3e-08 62.0 44 63.6


User provided reference genes

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