Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 0.0e+00 1223.4 615 100.0
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 9.0e-79 298.9 617 34.7
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 3.8e-61 240.4 578 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 2.5e-60 237.7 440 35.5
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 3.7e-48 197.2 445 31.5
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 6.1e-43 179.9 573 26.4
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 2.8e-40 171.0 571 26.4
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 4.8e-40 170.2 572 26.4
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 6.9e-39 166.4 581 25.0
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 5.9e-38 163.3 599 25.5
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.0e-37 162.5 571 26.6
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 1.7e-37 161.8 601 26.3
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 2.2e-37 161.4 594 25.8
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 2.2e-37 161.4 555 26.8
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 3.8e-37 160.6 612 25.8
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 5.0e-37 160.2 557 26.2
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 1.1e-36 159.1 610 25.9
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 1.4e-36 158.7 568 25.7
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.4e-36 158.7 615 25.4
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.9e-36 158.3 581 25.3
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 5.5e-36 156.8 566 26.5
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.2e-35 155.6 598 25.3
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.6e-35 154.1 623 25.2
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 3.6e-35 154.1 574 26.0
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 4.7e-35 153.7 558 26.2
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 4.7e-35 153.7 567 25.7
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 6.1e-35 153.3 573 26.5
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 7.9e-35 152.9 578 26.3
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.0e-34 152.5 615 24.4
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 1.4e-34 152.1 556 25.9
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 1.4e-34 152.1 567 25.6
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 1.8e-34 151.8 576 25.2
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 3.0e-34 151.0 549 25.5
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 3.0e-34 151.0 603 25.5
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 3.9e-34 150.6 614 24.3
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 8.8e-34 149.4 588 25.9
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.0e-33 148.3 583 25.6
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 2.6e-33 147.9 579 26.6
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 2.6e-33 147.9 571 25.7
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 7.4e-33 146.4 577 23.7
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.3e-32 145.6 581 25.6
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 1.3e-32 145.6 596 25.7
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.8e-32 144.4 619 24.7
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 2.8e-32 144.4 549 25.3
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 2.8e-32 144.4 615 23.9
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 2.8e-32 144.4 574 26.0
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 6.3e-32 143.3 538 25.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 5.3e-31 140.2 464 26.9
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 7.0e-31 139.8 579 23.7
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 1.5e-30 138.7 613 25.3
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 2.0e-30 138.3 560 25.2
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 2.0e-30 138.3 579 24.9
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.6e-30 137.9 580 24.5
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 3.5e-30 137.5 583 26.2
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 3.5e-30 137.5 560 25.9
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 4.5e-30 137.1 580 23.8
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 4.5e-30 137.1 589 23.9
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 4.5e-30 137.1 559 23.3
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 4.5e-30 137.1 596 26.0
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 5.9e-30 136.7 580 25.2
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 5.9e-30 136.7 569 23.9
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 1.0e-29 136.0 561 25.7
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.3e-29 135.6 571 23.8
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.7e-29 135.2 569 23.2
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 2.2e-29 134.8 467 26.3
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 6.5e-29 133.3 322 32.0
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 1.4e-28 132.1 564 25.5
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 2.5e-28 131.3 593 25.0
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 2.5e-28 131.3 630 23.8
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 4.2e-28 130.6 594 24.4
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 9.4e-28 129.4 551 24.9
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 1.2e-27 129.0 444 26.8
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 1.6e-27 128.6 543 24.5
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 1.6e-27 128.6 601 22.8
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 1.6e-27 128.6 559 26.1
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 4.7e-27 127.1 570 25.6
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 8.0e-27 126.3 561 23.5
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.8e-26 125.2 553 24.4
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 3.0e-26 124.4 643 24.1
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.9e-26 124.0 259 29.0
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.9e-26 124.0 583 24.2
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.1e-25 122.5 300 29.7
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.5e-25 122.1 286 28.3
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 5.7e-25 120.2 282 30.1
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 7.4e-25 119.8 608 23.4
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 3.7e-24 117.5 386 26.4
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 6.3e-24 116.7 584 22.6
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 8.2e-24 116.3 558 22.4
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 8.2e-24 116.3 661 23.0
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.1e-23 115.9 587 23.7
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 1.8e-23 115.2 294 27.9
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.1e-23 114.4 545 24.6
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 4.1e-23 114.0 554 25.1
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 3.5e-22 110.9 626 22.5
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 4.5e-22 110.5 311 28.6
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 7.7e-22 109.8 545 24.6
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 7.7e-22 109.8 547 24.5
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 7.7e-22 109.8 515 23.9
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.0e-21 109.4 327 27.2
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 1.3e-21 109.0 544 22.8
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 1.7e-21 108.6 553 24.6
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 2.9e-21 107.8 546 24.4
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 2.9e-21 107.8 583 24.0
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 1.1e-20 105.9 420 25.2
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.9e-20 105.1 562 23.0
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 1.9e-20 105.1 452 25.7
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.5e-20 104.8 516 24.2
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 7.2e-20 103.2 255 30.6
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.2e-19 102.4 564 22.9
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 3.6e-19 100.9 235 27.7
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 4.7e-19 100.5 256 29.3
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.8e-18 98.6 635 24.3
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 2.6e-17 94.7 389 25.2
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 5.7e-17 93.6 238 29.0
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 1.4e-15 89.0 238 27.3
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 1.4e-15 89.0 185 30.3
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 1.6e-14 85.5 280 28.2
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 1.3e-13 82.4 289 26.3
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 3.8e-13 80.9 225 28.4
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 5.0e-13 80.5 452 24.3
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 9.4e-12 76.3 109 39.4
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 2.1e-11 75.1 172 33.1
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 4.7e-11 73.9 427 23.4
AagrBONN_evm.TU.Sc2ySwM_117.2006 Anthoceros agrestis HOM05D004843 ORTHO05D005833 1.8e-10 72.0 190 29.5
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.7e-08 65.5 390 23.3
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 6.3e-08 63.5 289 26.0


User provided reference genes

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