Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 5.5e-107 391.0 194 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.0e-65 253.8 189 65.6
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.0e-65 253.8 181 67.4
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 8.8e-65 250.8 183 65.0
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 4.8e-63 245.0 194 62.9
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 8.3e-63 244.2 182 63.7
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 2.4e-62 242.7 189 60.8
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 3.1e-62 242.3 190 60.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.1e-62 242.3 183 62.8
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 3.1e-62 242.3 189 60.8
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 5.4e-62 241.5 188 60.1
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 7.0e-62 241.1 189 60.3
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 7.0e-62 241.1 189 59.8
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.2e-61 240.4 188 63.3
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.7e-61 239.2 185 62.7
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.2e-60 236.1 185 61.6
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.2e-60 236.1 187 60.4
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 5.0e-60 235.0 185 61.1
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 6.5e-60 234.6 178 62.9
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 6.5e-60 234.6 188 58.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 8.5e-60 234.2 187 59.9
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.1e-59 233.8 184 62.0
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.5e-59 233.4 183 59.6
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.9e-59 233.0 186 57.5
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 3.2e-59 232.3 187 59.9
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 4.2e-59 231.9 186 55.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.2e-59 231.9 187 58.3
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.5e-59 231.5 181 63.0
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 9.4e-59 230.7 185 62.7
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.2e-58 230.3 188 58.5
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.6e-58 229.9 187 59.4
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.1e-58 229.6 188 59.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.7e-58 229.2 185 62.2
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.7e-58 229.2 190 57.9
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 4.7e-58 228.4 187 60.4
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 4.7e-58 228.4 187 59.4
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.4e-57 226.9 181 59.1
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 4.0e-57 225.3 181 60.8
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.2e-57 224.9 177 62.7
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 6.8e-57 224.6 189 57.7
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 6.8e-57 224.6 192 56.8
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 6.8e-57 224.6 189 57.1
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 8.8e-57 224.2 187 60.4
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 1.3e-55 220.3 190 57.4
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.2e-55 219.5 190 56.3
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.8e-55 219.2 185 58.9
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.7e-55 218.8 187 57.8
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.7e-55 218.8 188 56.4
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 4.9e-55 218.4 187 57.2
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 6.3e-55 218.0 189 56.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.1e-54 217.2 188 58.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.4e-54 216.9 190 57.4
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 3.1e-54 215.7 187 57.2
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.1e-54 215.3 189 55.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 4.1e-54 215.3 186 57.5
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 4.1e-54 215.3 191 55.5
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 9.2e-54 214.2 162 63.0
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 9.2e-54 214.2 180 59.4
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.6e-53 213.4 195 55.9
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.6e-53 213.4 190 54.7
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 2.0e-53 213.0 189 53.4
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.7e-53 212.6 188 57.4
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 3.5e-53 212.2 162 62.3
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 4.5e-53 211.8 188 54.8
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 4.5e-53 211.8 190 53.7
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 5.9e-53 211.5 185 54.1
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.0e-52 210.7 184 56.5
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.3e-52 209.5 188 54.3
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 2.3e-52 209.5 188 54.3
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 2.9e-52 209.1 186 54.3
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.8e-52 208.8 177 58.2
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 5.0e-52 208.4 191 53.9
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 5.0e-52 208.4 191 53.9
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 8.6e-52 207.6 191 53.9
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 8.6e-52 207.6 191 53.4
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 8.6e-52 207.6 191 53.9
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.1e-51 207.2 194 53.1
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.5e-51 206.8 191 53.4
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.5e-51 206.8 191 53.4
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.5e-51 206.1 188 53.7
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 9.5e-51 204.1 192 54.2
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 9.5e-51 204.1 193 57.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.6e-50 203.4 189 51.9
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.6e-50 203.4 184 56.0
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 6.1e-50 201.4 187 54.5
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 6.8e-49 198.0 190 52.6
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.6e-48 196.1 186 54.8
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 3.7e-47 192.2 187 51.3
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 2.4e-46 189.5 183 51.9
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 5.9e-45 184.9 146 58.9
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 7.8e-45 184.5 172 54.1
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.3e-43 179.1 164 54.3
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.3e-41 172.9 149 57.0
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 3.0e-36 156.0 185 46.5
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.5e-35 153.7 184 45.7
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 2.8e-34 149.4 99 70.7
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.9e-31 138.7 109 56.0
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 5.8e-24 115.2 84 67.9
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.4e-22 109.8 88 63.6
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 7.8e-21 104.8 76 68.4
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 8.6e-20 101.3 92 53.3
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.8e-18 96.3 90 53.3
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 6.9e-17 91.7 142 39.4
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.2e-13 80.9 55 67.3
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.3e-12 76.6 164 32.9
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 8.7e-12 74.7 78 47.4
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 8.7e-12 74.7 78 47.4
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.1e-10 70.1 173 31.8
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 4.8e-10 68.9 148 29.7
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.4e-09 67.4 176 28.4
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.4e-09 66.6 179 27.4
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.4e-09 66.6 166 30.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 4.0e-09 65.9 173 28.9
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.0e-09 65.9 170 28.2
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.2e-08 64.3 182 30.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.5e-08 63.9 170 27.6
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.5e-08 63.9 166 29.5
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.5e-08 63.9 157 27.4
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 2.6e-08 63.2 73 45.2
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 3.4e-08 62.8 163 25.8
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.9e-06 57.0 49 51.0
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.2e-06 56.2 179 22.9
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 5.4e-06 55.5 81 37.0


User provided reference genes

Program Settings