Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_8100 Physcomitrium patens HOM05D005130 ORTHO05D006185 1.3e-60 236.1 109 100.0
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 4.2e-40 167.9 102 78.4
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 1.6e-39 166.0 100 75.0
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 1.5e-37 159.5 94 78.7
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 6.3e-36 154.1 100 74.0
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 6.3e-36 154.1 101 73.3
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 8.2e-36 153.7 98 74.5
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 1.4e-35 152.9 101 72.3
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 1.4e-35 152.9 98 73.5
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 1.4e-35 152.9 101 73.3
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 1.4e-35 152.9 101 73.3
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 1.8e-35 152.5 98 73.5
COL.COLO4_25325 Corchorus olitorius HOM05D005130 ORTHO05D006185 1.8e-35 152.5 96 72.9
SGA_v2.0_scaffold52G19001 Striga asiatica HOM05D005130 ORTHO05D006185 1.8e-35 152.5 99 73.7
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 2.4e-35 152.1 98 72.4
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 2.4e-35 152.1 98 73.5
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 2.4e-35 152.1 98 73.5
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 2.4e-35 152.1 98 73.5
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 2.4e-35 152.1 97 74.2
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 3.1e-35 151.8 101 71.3
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 3.1e-35 151.8 98 73.5
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 3.1e-35 151.8 90 81.1
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 4.1e-35 151.4 101 72.3
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 4.1e-35 151.4 101 72.3
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 4.1e-35 151.4 101 71.3
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 4.1e-35 151.4 98 71.4
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 5.3e-35 151.0 90 77.8
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 5.3e-35 151.0 90 78.9
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 5.3e-35 151.0 98 72.4
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 7.0e-35 150.6 90 78.9
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 7.0e-35 150.6 90 78.9
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 7.0e-35 150.6 101 71.3
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 7.0e-35 150.6 101 72.3
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 7.0e-35 150.6 101 71.3
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 7.0e-35 150.6 90 80.0
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 7.0e-35 150.6 98 73.5
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 9.1e-35 150.2 90 77.8
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 9.1e-35 150.2 95 74.7
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 9.1e-35 150.2 101 70.3
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 9.1e-35 150.2 90 78.9
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 1.2e-34 149.8 101 71.3
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 1.2e-34 149.8 101 71.3
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 1.2e-34 149.8 102 73.5
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 1.2e-34 149.8 98 73.5
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 1.2e-34 149.8 101 71.3
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 1.2e-34 149.8 95 72.6
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 1.2e-34 149.8 98 72.4
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 1.2e-34 149.8 90 77.8
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 1.2e-34 149.8 90 80.0
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 1.6e-34 149.4 90 77.8
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 1.6e-34 149.4 94 75.5
Haze_11084 Corylus avellana HOM05D005130 ORTHO05D006185 1.6e-34 149.4 99 71.7
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.6e-34 149.4 101 72.3
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.6e-34 149.4 101 72.3
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 1.6e-34 149.4 101 71.3
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.6e-34 149.4 90 77.8
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.6e-34 149.4 93 75.3
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.6e-34 149.4 90 77.8
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 1.6e-34 149.4 90 77.8
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 2.0e-34 149.1 90 78.9
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 2.0e-34 149.1 90 77.8
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 2.0e-34 149.1 90 77.8
AUR62004123 Chenopodium quinoa HOM05D005130 ORTHO05D006185 2.0e-34 149.1 101 72.3
AUR62013718 Chenopodium quinoa HOM05D005130 ORTHO05D006185 2.0e-34 149.1 101 72.3
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 2.0e-34 149.1 101 69.3
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 2.0e-34 149.1 90 78.9
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 2.0e-34 149.1 101 71.3
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 2.0e-34 149.1 101 71.3
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 2.0e-34 149.1 90 77.8
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 2.0e-34 149.1 102 71.6
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 2.7e-34 148.7 90 78.9
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 2.7e-34 148.7 90 78.9
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 2.7e-34 148.7 90 78.9
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 2.7e-34 148.7 98 72.4
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 2.7e-34 148.7 98 72.4
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 2.7e-34 148.7 101 70.3
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 2.7e-34 148.7 101 70.3
Psat7g198120 Pisum sativum HOM05D005130 ORTHO05D006185 2.7e-34 148.7 99 69.7
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 2.7e-34 148.7 101 70.3
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 3.5e-34 148.3 90 76.7
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 3.5e-34 148.3 90 77.8
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 4.5e-34 147.9 90 76.7
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 4.5e-34 147.9 101 70.3
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 4.5e-34 147.9 98 71.4
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 5.9e-34 147.5 90 76.7
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 5.9e-34 147.5 101 71.3
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 5.9e-34 147.5 88 78.4
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 5.9e-34 147.5 90 76.7
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 7.7e-34 147.1 95 73.7
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 7.7e-34 147.1 95 73.7
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 7.7e-34 147.1 95 73.7
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 7.7e-34 147.1 99 69.7
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 1.0e-33 146.7 102 70.6
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 1.0e-33 146.7 95 73.7
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.3e-33 146.4 101 69.3
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 1.3e-33 146.4 102 71.6
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 1.3e-33 146.4 100 70.0
Ah.05g173340 Amaranthus hybridus HOM05D005130 ORTHO05D006185 2.2e-33 145.6 101 71.3
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 2.9e-33 145.2 98 71.4
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 2.9e-33 145.2 90 75.6
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 2.9e-33 145.2 90 77.8
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 3.8e-33 144.8 94 73.4
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 5.0e-33 144.4 101 72.3
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 5.0e-33 144.4 99 71.7
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 6.5e-33 144.1 101 69.3
CBR_g12583 Chara braunii HOM05D005130 ORTHO05D006185 8.5e-33 143.7 97 69.1
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 1.1e-32 143.3 98 70.4
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 5.5e-32 141.0 102 70.6
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 5.5e-32 141.0 90 71.1
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 7.2e-32 140.6 90 72.2
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 2.1e-31 139.0 90 71.1
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 2.1e-31 139.0 91 73.6
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 3.6e-31 138.3 90 71.1
SMO203G0049 Selaginella moellendorffii HOM05D005130 ORTHO05D006185 6.3e-28 127.5 93 67.7
TPR.G4673 Trifolium pratense HOM05D005130 ORTHO05D006185 1.4e-27 126.3 110 59.1
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.2e-23 113.2 64 82.8
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.2e-23 113.2 64 82.8
Actinidia31846 Actinidia chinensis HOM05D005130 ORTHO05D006185 8.0e-23 110.5 64 79.7
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 1.2e-21 106.7 90 63.3
arahy.Tifrunner.gnm1.ann1.3XEJ8W Arachis hypogaea HOM05D005130 ORTHO05D006185 2.2e-20 102.4 66 72.7
TAR374G0198 Trochodendron aralioides HOM05D002676 ORTHO05D006185 2.3e-14 82.4 61 63.9
Eucgr.H03364 Eucalyptus grandis HOM05D005130 ORTHO05D006185 1.5e-13 79.7 66 60.6
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 2.6e-13 79.0 48 77.1
Oeu040377.1 Olea europaea HOM05D005130 ORTHO05D006185 1.3e-12 76.6 39 87.2
Rhsim09G0201500 Rhododendron simsii HOM05D005130 ORTHO05D006185 1.1e-11 73.6 35 91.4
Eucgr.H04599 Eucalyptus grandis HOM05D005130 ORTHO05D006185 3.5e-10 68.6 38 78.9
Cre06.g289700 Chlamydomonas reinhardtii HOM05D005130 ORTHO05D006185 6.0e-10 67.8 57 54.4
ATR0785G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 1.7e-09 66.2 44 68.2
BcaB07g33562 Brassica carinata HOM05D005130 ORTHO05D006185 8.6e-09 63.9 56 55.4
Ciclev10023954m.g Citrus clementina HOM05D005130 ORTHO05D006185 3.3e-08 62.0 38 73.7
Prupe.2G018100 Prunus persica HOM05D005130 ORTHO05D006185 4.3e-08 61.6 38 71.1
Prupe.2G068700 Prunus persica HOM05D005130 ORTHO05D006185 4.3e-08 61.6 33 81.8


User provided reference genes

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