Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.6e-239 832.4 429 100.0
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.7e-173 610.5 429 74.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.7e-106 389.8 352 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 8.1e-95 351.7 314 53.8
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 4.8e-87 325.9 320 51.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.1e-86 324.7 339 48.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.8e-86 323.9 383 46.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.0e-86 322.8 344 48.5
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.0e-86 322.8 341 50.1
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 4.0e-86 322.8 341 50.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 4.0e-86 322.8 368 48.9
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 6.9e-86 322.0 341 49.9
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.6e-85 320.1 320 50.6
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 2.6e-85 320.1 315 51.1
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.4e-85 319.7 343 46.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.4e-85 319.7 319 49.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.0e-84 318.2 366 47.5
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.7e-84 317.4 379 46.4
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.7e-84 317.4 323 50.5
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.7e-84 317.4 356 46.3
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.2e-84 317.0 358 48.9
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.8e-84 316.2 357 49.9
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 4.9e-84 315.8 345 50.1
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 4.9e-84 315.8 315 50.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 4.9e-84 315.8 345 47.5
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.2e-83 313.2 343 48.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.5e-83 312.4 342 48.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 5.5e-83 312.4 342 48.8
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 7.1e-83 312.0 358 45.8
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 7.1e-83 312.0 363 46.8
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 4.6e-82 309.3 315 49.2
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.6e-82 309.3 362 46.7
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.0e-82 308.9 357 46.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 6.0e-82 308.9 324 49.1
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 7.9e-82 308.5 344 45.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 7.9e-82 308.5 292 51.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.3e-81 307.8 340 47.9
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.3e-81 307.8 364 46.7
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-81 307.8 303 50.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.8e-81 307.4 306 49.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.3e-81 307.0 306 50.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.9e-81 306.2 292 51.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 5.1e-81 305.8 391 45.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 8.7e-81 305.1 303 48.5
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.5e-80 304.3 366 46.7
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.9e-80 303.9 344 46.8
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.5e-80 303.5 391 45.3
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.3e-80 303.1 291 52.9
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 3.3e-80 303.1 344 45.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.3e-80 302.8 347 44.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 4.3e-80 302.8 343 46.6
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.7e-80 302.4 343 47.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.4e-80 302.0 358 46.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 9.6e-80 301.6 347 46.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 9.6e-80 301.6 358 44.4
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.6e-79 300.8 303 49.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.8e-79 300.1 358 45.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.8e-79 300.1 341 45.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.8e-79 300.1 343 46.1
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.8e-79 300.1 340 46.8
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-79 299.7 304 49.7
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.8e-79 299.3 348 44.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.8e-79 299.3 302 49.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.2e-79 298.5 303 48.8
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.1e-78 298.1 358 46.1
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 4.0e-78 296.2 382 42.7
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.3e-78 295.8 357 47.3
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 5.3e-78 295.8 303 48.5
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.0e-77 293.9 341 45.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.0e-77 293.9 358 45.5
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.6e-77 293.5 288 50.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 7.6e-77 292.0 369 42.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 7.6e-77 292.0 347 45.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.0e-76 291.6 363 44.4
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.0e-76 291.6 360 47.2
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-76 290.8 344 45.6
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.9e-76 290.0 304 46.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.9e-76 290.0 320 47.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.9e-76 290.0 355 44.5
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.9e-76 290.0 313 49.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.1e-75 288.1 324 46.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-75 287.3 293 47.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 5.5e-75 285.8 294 48.6
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 5.5e-75 285.8 361 43.8
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 5.5e-75 285.8 334 44.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 9.3e-75 285.0 288 47.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.7e-74 283.5 343 44.0
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 6.1e-74 282.3 304 46.1
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.0e-73 281.6 381 41.5
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.3e-73 280.4 360 43.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.3e-73 280.4 372 41.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.3e-73 280.4 404 39.4
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 6.7e-73 278.9 381 40.9
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.1e-72 278.1 306 46.1
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.1e-72 278.1 216 61.1
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.3e-72 276.2 324 43.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.3e-71 274.6 360 42.5
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-71 273.5 303 48.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 4.8e-71 272.7 319 42.9
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-70 271.6 303 47.9
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.8e-70 270.8 345 42.0
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.8e-70 270.8 216 58.3
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.0e-70 268.5 374 40.9
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-69 267.7 367 41.1
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.0e-69 267.3 359 43.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-69 266.9 290 47.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.6e-69 266.9 290 47.9
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.6e-69 266.9 290 47.9
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.6e-69 266.9 290 47.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 2.6e-69 266.9 290 47.9
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.6e-69 266.9 376 41.5
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 7.7e-69 265.4 374 41.4
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 7.7e-69 265.4 290 47.6
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.7e-69 265.4 266 49.6
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.7e-68 264.2 310 46.1
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 3.8e-68 263.1 285 47.0
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.5e-68 262.3 269 48.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.2e-67 259.6 290 47.6
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.2e-67 259.6 290 47.6
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 5.5e-67 259.2 395 39.0
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 5.5e-67 259.2 290 47.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.2e-66 258.1 365 40.8
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.2e-66 258.1 290 47.6
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-66 257.7 290 47.6
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.7e-66 256.9 297 45.8
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.1e-66 255.8 364 42.3
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-65 255.0 283 46.3
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.3e-65 253.8 357 39.8
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 3.9e-65 253.1 231 52.8
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-64 250.4 264 49.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 5.7e-64 249.2 304 43.8
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 9.7e-64 248.4 351 41.3
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 8.2e-63 245.4 223 52.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.1e-62 243.0 460 33.7
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 5.3e-62 242.7 383 38.4
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 5.9e-61 239.2 338 37.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.0e-60 238.4 273 46.9
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.5e-60 235.7 225 51.6
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.5e-59 233.8 352 40.1
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.3e-57 227.3 282 41.8
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-55 221.5 278 43.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.1e-54 216.9 299 42.1
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 5.9e-53 212.6 180 55.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.0e-45 187.6 134 66.4
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.8e-44 183.3 345 35.9
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.5e-43 180.6 306 36.3
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 5.5e-43 179.5 343 32.9
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.7e-39 167.9 263 35.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.7e-37 159.1 154 50.6
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 2.5e-35 154.1 271 35.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.1e-34 151.0 192 40.6
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.2e-27 126.7 95 58.9
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.3e-23 115.2 214 33.6
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.7e-20 104.8 69 68.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 4.7e-18 96.7 76 57.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.7e-15 88.2 190 34.2
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 7.8e-13 79.3 169 33.1
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.8e-10 70.9 60 58.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 4.7e-10 70.1 172 29.1
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.1e-06 58.9 57 43.9


User provided reference genes

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