Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.1e-219 765.4 386 100.0
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.4e-178 629.8 378 81.2
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 6.7e-141 504.6 380 65.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 4.8e-139 498.4 383 64.5
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.0e-125 454.1 401 55.6
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.0e-113 413.3 380 55.5
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 3.5e-113 412.5 380 55.5
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 7.8e-113 411.4 381 54.3
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 5.0e-112 408.7 379 55.7
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 5.0e-112 408.7 380 53.2
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 8.6e-112 407.9 381 54.3
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 1.1e-111 407.5 380 53.7
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 1.5e-111 407.1 382 52.9
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 2.5e-111 406.4 378 55.6
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 4.3e-111 405.6 378 53.2
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 5.6e-111 405.2 378 55.3
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.8e-110 402.9 380 52.4
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 6.2e-110 401.7 379 54.6
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 8.0e-110 401.4 380 52.6
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 8.0e-110 401.4 380 52.6
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 3.1e-109 399.4 380 52.6
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 5.2e-109 398.7 385 52.7
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 6.8e-109 398.3 378 51.9
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.0e-108 396.7 383 52.2
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.0e-108 396.7 382 53.4
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 3.4e-108 396.0 381 54.1
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 7.5e-108 394.8 381 52.5
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 7.5e-108 394.8 381 52.2
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 7.5e-108 394.8 380 52.9
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 9.8e-108 394.4 379 53.0
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 9.8e-108 394.4 378 52.4
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.3e-107 394.0 380 52.9
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.7e-107 393.7 378 52.1
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.7e-107 393.7 381 54.1
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 2.9e-107 392.9 386 52.1
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 3.7e-107 392.5 381 51.7
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 3.7e-107 392.5 388 52.6
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 3.7e-107 392.5 377 53.3
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 4.9e-107 392.1 380 52.4
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 6.4e-107 391.7 384 50.8
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 8.3e-107 391.3 381 52.0
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.1e-106 391.0 383 52.2
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.4e-106 390.6 395 52.4
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.4e-106 390.6 376 52.4
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.9e-106 390.2 378 51.6
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.9e-106 390.2 379 51.7
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 2.4e-106 389.8 379 52.5
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 2.4e-106 389.8 381 50.4
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.2e-106 389.4 389 52.7
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 3.2e-106 389.4 378 51.3
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 4.1e-106 389.0 385 52.5
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 4.1e-106 389.0 379 52.0
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 4.1e-106 389.0 379 52.0
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 4.1e-106 389.0 377 52.0
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 4.1e-106 389.0 382 50.8
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 4.1e-106 389.0 380 52.1
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 4.1e-106 389.0 380 52.1
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 7.0e-106 388.3 388 52.3
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 1.2e-105 387.5 381 52.0
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.2e-105 387.5 384 51.0
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.6e-105 387.1 381 52.0
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.0e-105 386.7 380 51.6
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 2.0e-105 386.7 381 52.5
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 2.7e-105 386.3 382 51.8
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 2.7e-105 386.3 382 49.5
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 3.5e-105 386.0 380 52.1
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 4.6e-105 385.6 386 51.0
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 4.6e-105 385.6 381 50.7
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 7.8e-105 384.8 382 51.6
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.7e-104 383.6 381 51.7
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 2.3e-104 383.3 378 50.3
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 2.3e-104 383.3 379 51.5
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 3.9e-104 382.5 378 50.3
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 5.0e-104 382.1 388 52.8
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 6.6e-104 381.7 378 50.5
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.1e-103 380.9 381 49.9
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 1.5e-103 380.6 380 51.8
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.9e-103 380.2 379 52.5
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 3.3e-103 379.4 381 51.7
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 3.3e-103 379.4 383 51.7
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.3e-103 379.0 381 50.1
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.3e-103 379.0 388 51.0
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 7.3e-103 378.3 386 49.5
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 1.2e-102 377.5 379 50.7
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.6e-102 375.9 380 49.5
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.4e-101 374.0 380 49.7
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 4.0e-101 372.5 380 51.1
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 8.9e-101 371.3 379 50.9
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 1.2e-100 370.9 378 49.7
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 2.0e-100 370.2 378 49.5
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 2.0e-100 370.2 379 49.6
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 1.4e-98 364.0 349 53.9
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 2.4e-98 363.2 379 50.7
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 3.5e-97 359.4 379 49.1
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 3.3e-95 352.8 378 50.5
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 9.5e-95 351.3 357 50.4
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 2.4e-93 346.7 511 39.9
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 6.8e-93 345.1 381 48.6
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 2.0e-92 343.6 432 45.1
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 4.3e-87 325.9 309 54.7
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.4e-82 308.9 351 46.7
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 7.3e-79 298.5 314 50.3
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.1e-77 294.7 308 46.8
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 5.8e-76 288.9 384 44.0
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 7.1e-74 282.0 291 49.1
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 2.1e-73 280.4 275 53.5
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.3e-71 273.1 306 46.4
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.6e-70 270.8 291 48.1
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 1.2e-65 254.6 326 43.6
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 1.0e-64 251.5 263 47.5
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 7.4e-63 245.4 396 38.9
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.3e-62 244.6 270 45.6
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.5e-60 237.7 433 40.4
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.0e-60 237.3 387 38.0
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 3.8e-59 233.0 240 52.9
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.4e-58 231.1 246 46.3
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 8.2e-54 215.3 425 36.9
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 3.3e-47 193.4 231 45.5
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 8.2e-46 188.7 152 63.2
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 1.0e-43 181.8 151 62.3
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 5.1e-40 169.5 144 54.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 6.3e-38 162.5 182 47.8
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.7e-35 154.5 126 63.5
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 6.5e-35 152.5 147 48.3
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.2e-33 148.3 138 46.4
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.2e-33 148.3 108 59.3
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 3.1e-21 107.1 112 41.1
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.8e-13 81.3 84 56.0
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.1e-13 80.1 89 37.1
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-13 79.7 81 46.9
SMO163G0069 Selaginella moellendorffii HOM05D020292 ORTHO05D007481 5.4e-13 79.7 85 44.7
SMO340G0002 Selaginella moellendorffii HOM05D020292 ORTHO05D377625 1.2e-09 68.6 95 34.7
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 2.8e-09 67.4 146 32.2
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.8e-09 67.4 60 50.0
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 6.8e-08 62.8 79 39.2
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 6.8e-08 62.8 63 47.6
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 2.6e-07 60.8 36 66.7
SMO361G0781 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 9.8e-07 58.9 64 39.1
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 2.8e-06 57.4 53 52.8
SMO173G0076 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 6.3e-06 56.2 94 31.9


User provided reference genes

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