Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_5710 Physcomitrium patens HOM05D000076 ORTHO05D312077 2.0e-20 101.3 44 100.0
Pp3c17_17610 Physcomitrium patens HOM05D000076 ORTHO05D006537 4.2e-15 83.6 43 86.0
SMO118G0203 Selaginella moellendorffii HOM05D000076 ORTHO05D006537 2.0e-09 64.7 42 64.3
AagrBONN_evm.TU.Sc2ySwM_362.575 Anthoceros agrestis HOM05D000076 ORTHO05D006537 2.7e-09 64.3 42 64.3
SEGI_23169 Sequoiadendron giganteum HOM05D000076 ORTHO05D006537 4.5e-09 63.5 42 64.3
ATR0824G261 Amborella trichopoda HOM05D000076 ORTHO05D006537 5.9e-09 63.2 42 61.9
CAN.G272.5 Capsicum annuum HOM05D000076 ORTHO05D006537 1.3e-08 62.0 38 68.4
Peaxi162Scf00128g00443 Petunia axillaris HOM05D000076 ORTHO05D006537 1.3e-08 62.0 38 68.4
HPP92_016982 Vanilla planifolia HOM05D000076 ORTHO05D006537 1.3e-08 62.0 42 61.9
Atru.chr11.2162 Acer truncatum HOM05D000076 ORTHO05D006537 1.7e-08 61.6 42 61.9
EL10Ac6g13874 Beta vulgaris HOM05D000076 ORTHO05D006537 1.7e-08 61.6 42 61.9
MBI09_g06385_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D006537 1.7e-08 61.6 42 61.9
Nitab4.5_0000524g0080 Nicotiana tabacum HOM05D000076 ORTHO05D006537 1.7e-08 61.6 38 68.4
Nitab4.5_0001978g0010 Nicotiana tabacum HOM05D000076 ORTHO05D006537 1.7e-08 61.6 38 68.4
Potri.010G048500 Populus trichocarpa HOM05D000076 ORTHO05D006537 1.7e-08 61.6 42 61.9
TPR.G30528 Trifolium pratense HOM05D000076 ORTHO05D006537 1.7e-08 61.6 42 61.9
Aqoxy3G01255 Aquilegia oxysepala HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Cpa.g.sc33.45 Carica papaya HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
CiPaw.05G179900 Carya illinoinensis HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
CiPaw.06G066500 Carya illinoinensis HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Ca_25136_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Ciclev10031037m.g Citrus clementina HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
COL.COLO4_23484 Corchorus olitorius HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Duzib251G0776 Durio zibethinus HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Eucgr.H02475 Eucalyptus grandis HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
FvH4_4g25921 Fragaria vesca HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
FAN17G2736 Fragaria x ananassa HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Glyma.11G243700 Glycine max HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Glyma.18G013400 Glycine max HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Gohir.A12G145400 Gossypium hirsutum HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Gohir.D12G149900 Gossypium hirsutum HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Gorai.008G161400 Gossypium raimondii HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Lj6g0014045 Lotus japonicus HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Lalb_Chr11g0075541 Lupinus albus HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Manes.12G021200 Manihot esculenta HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Medtr3g086570 Medicago truncatula HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Nn4g22563 Nelumbo nucifera HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Psat5g091800 Pisum sativum HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Prupe.1G247100 Prunus persica HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
QL03p056977 Quercus lobata HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 2.2e-08 61.2 42 61.9
SHI17813 Sapria himalayana HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Sed0027991 Sechium edule HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Hund25398 Selenicereus undatus HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Sc11g0000890 Simmondsia chinensis HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
THA.LOC104825668 Tarenaya hassleriana HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
Thecc.02G263200 Theobroma cacao HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
TWI75G1343 Tripterygium wilfordii HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
TAR371G0062 Trochodendron aralioides HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
TAR629G2896 Trochodendron aralioides HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
GSVIVG01000555001 Vitis vinifera HOM05D000076 ORTHO05D006537 2.2e-08 61.2 42 61.9
BcaC04g23933 Brassica carinata HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
A06p42050 Brassica napus HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
A09p03030 Brassica napus HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
A09p03060 Brassica napus HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
C07p35430 Brassica napus HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
C09p03220 Brassica napus HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
BolC7t44067H Brassica oleracea HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
BolC9t53247H Brassica oleracea HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
BraA06t27122Z Brassica rapa HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
BraA09t35945Z Brassica rapa HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
CARHR147380 Cardamine hirsuta HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
Thhalv10003920m.g Eutrema salsugineum HOM05D000076 ORTHO05D006537 2.9e-08 60.8 42 61.9
CSS0034011 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006537 3.8e-08 60.5 42 61.9
MD16G1099100 Malus domestica HOM05D000076 ORTHO05D006537 3.8e-08 60.5 42 61.9
MD13G1098200 Malus domestica HOM05D000076 ORTHO05D006537 5.0e-08 60.1 42 61.9
Zm00001eb232610 Zea mays HOM05D000076 ORTHO05D006537 5.0e-08 60.1 38 65.8
Actinidia37445 Actinidia chinensis HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
arahy.Tifrunner.gnm1.ann1.P892WD Arachis hypogaea HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
arahy.Tifrunner.gnm1.ann1.THB5XW Arachis hypogaea HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
AUR62005502 Chenopodium quinoa HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
AUR62024238 Chenopodium quinoa HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
ClCG05G025870 Citrullus lanatus HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
MELO3C011938.2 Cucumis melo HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
CsaV3_5G030990 Cucumis sativus L. HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
Duzib248G1451 Durio zibethinus HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
Gohir.A04G136900 Gossypium hirsutum HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
Gorai.012G173200 Gossypium raimondii HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
PSO017G3552 Papaver somniferum HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
PSO339G4815 Papaver somniferum HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
Phvul.001G255600 Phaseolus vulgaris HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
PGR119G0671 Punica granatum HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
Solyc05g013730.3 Solanum lycopersicum HOM05D000076 ORTHO05D006537 6.5e-08 59.7 38 65.8
Sopen05g008650 Solanum pennellii HOM05D000076 ORTHO05D006537 6.5e-08 59.7 38 65.8
PGSC0003DMG400011727 Solanum tuberosum HOM05D000076 ORTHO05D006537 6.5e-08 59.7 38 65.8
TWI18G0661 Tripterygium wilfordii HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
VMungo1383G2989 Vigna mungo HOM05D000076 ORTHO05D006537 6.5e-08 59.7 42 59.5
Ah.03g133370 Amaranthus hybridus HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
AL5G15140 Arabidopsis lyrata HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
Carub.0005s0429 Capsella rubella HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 8.5e-08 59.3 42 59.5
Rhsim12G0108500 Rhododendron simsii HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
Sp2g15520 Schrenkiella parvula HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
THA.LOC104805278 Tarenaya hassleriana HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
vmacro16178 Vaccinium macrocarpon HOM05D000076 ORTHO05D006537 8.5e-08 59.3 42 59.5
Actinidia15107 Actinidia chinensis HOM05D000076 ORTHO05D006537 1.1e-07 58.9 38 63.2
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 1.1e-07 58.9 42 59.5
CDE04G1448 Ceratophyllum demersum HOM05D000076 ORTHO05D006537 1.1e-07 58.9 38 63.2
Potri.008G185200 Populus trichocarpa HOM05D000076 ORTHO05D006537 1.1e-07 58.9 42 59.5
RcHm_v2.0_Chr4g0433391 Rosa chinensis HOM05D000076 ORTHO05D006537 1.1e-07 58.9 42 59.5
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 1.1e-07 58.9 42 59.5
CSS0033390 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006537 1.5e-07 58.5 38 63.2
Oeu031880.1 Olea europaea HOM05D000076 ORTHO05D006537 1.5e-07 58.5 42 59.5
DCAR_029364 Daucus carota HOM05D000076 ORTHO05D006537 1.9e-07 58.2 42 57.1
Dinv15210 Davidia involucrata HOM05D000076 ORTHO05D006537 1.9e-07 58.2 42 59.5
Oeu057547.1 Olea europaea HOM05D000076 ORTHO05D006537 1.9e-07 58.2 38 63.2
PSO478G4993 Papaver somniferum HOM05D000076 ORTHO05D006537 1.9e-07 58.2 42 57.1
ECA246G3556 Erigeron canadensis HOM05D000076 ORTHO05D006537 3.2e-07 57.4 38 63.2
HanXRQChr11g0329181 Helianthus annuus HOM05D000076 ORTHO05D006537 3.2e-07 57.4 38 63.2
HanXRQChr17g0539951 Helianthus annuus HOM05D000076 ORTHO05D006537 3.2e-07 57.4 38 63.2
Hma1.2p1_0079F.1_g041100 Hydrangea macrophylla HOM05D000076 ORTHO05D006537 3.2e-07 57.4 38 63.2
Lsat_1_v5_gn_3_30300 Lactuca sativa HOM05D000076 ORTHO05D006537 3.2e-07 57.4 38 63.2
Lj6A814G99 Lonicera japonica HOM05D000076 ORTHO05D006537 3.2e-07 57.4 38 63.2
MSTRG.13342 Avicennia marina HOM05D000076 ORTHO05D006537 4.2e-07 57.0 38 63.2
Cc11_g15960 Coffea canephora HOM05D000076 ORTHO05D006537 4.2e-07 57.0 38 63.2
Migut.E00214 Erythranthe guttata HOM05D000076 ORTHO05D006537 4.2e-07 57.0 38 63.2
Os02g0158800 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006537 4.2e-07 57.0 38 60.5
PSO478G1179 Papaver somniferum HOM05D000076 ORTHO05D006537 4.2e-07 57.0 42 57.1
SalBow1G8493 Salvia bowleyana HOM05D000076 ORTHO05D006537 4.2e-07 57.0 38 63.2
unitig_62.g23663 Utricularia gibba HOM05D000076 ORTHO05D006537 4.2e-07 57.0 38 63.2
DCAR_029207 Daucus carota HOM05D000076 ORTHO05D006537 5.5e-07 56.6 42 57.1
SGA_v2.0_scaffold63G21740 Striga asiatica HOM05D000076 ORTHO05D006537 5.5e-07 56.6 38 63.2
SGA_v2.0_scaffold87G27061 Striga asiatica HOM05D000076 ORTHO05D006537 5.5e-07 56.6 38 63.2
Dinv14738 Davidia involucrata HOM05D000076 ORTHO05D006537 7.2e-07 56.2 42 57.1
Gohir.D04G180100 Gossypium hirsutum HOM05D000076 ORTHO05D006537 9.4e-07 55.8 42 54.8
Zm00001eb225920 Zea mays HOM05D000076 ORTHO05D006537 1.2e-06 55.5 42 52.4
unitig_52.g17180 Utricularia gibba HOM05D000076 ORTHO05D006537 1.6e-06 55.1 38 57.9
Zm00001eb273490 Zea mays HOM05D000076 ORTHO05D006537 2.1e-06 54.7 38 55.3
Hma1.2p1_0937F.1_g239040 Hydrangea macrophylla HOM05D000076 ORTHO05D006537 4.7e-06 53.5 38 60.5
BcaNung06888 Brassica carinata HOM05D000076 ORTHO05D006537 8.0e-06 52.8 32 71.9


User provided reference genes

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