Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_5520 Physcomitrium patens HOM05D001021 ORTHO05D312360 8.6e-37 156.4 74 100.0
Pp3c13_20420 Physcomitrium patens HOM05D001021 ORTHO05D000894 1.7e-16 89.0 77 61.0
SEGI_04114 Sequoiadendron giganteum HOM05D001021 ORTHO05D000894 9.3e-15 83.2 78 56.4
Manes.01G130700 Manihot esculenta HOM05D001021 ORTHO05D000894 4.6e-14 80.9 78 53.8
AUR62040441 Chenopodium quinoa HOM05D001021 ORTHO05D000894 1.0e-13 79.7 79 54.4
MSTRG.14305 Avicennia marina HOM05D001021 ORTHO05D000894 1.3e-13 79.3 78 53.8
SMO364G0678 Selaginella moellendorffii HOM05D001021 ORTHO05D000894 1.3e-13 79.3 77 54.5
Rhsim06G0130100 Rhododendron simsii HOM05D001021 ORTHO05D000894 1.8e-13 79.0 78 56.4
Hund07772 Selenicereus undatus HOM05D001021 ORTHO05D000894 1.8e-13 79.0 78 52.6
vmacro12385 Vaccinium macrocarpon HOM05D001021 ORTHO05D000894 1.8e-13 79.0 78 56.4
AUR62024050 Chenopodium quinoa HOM05D001021 ORTHO05D000894 2.3e-13 78.6 79 53.2
Duzib187G0472 Durio zibethinus HOM05D001021 ORTHO05D000894 2.3e-13 78.6 78 53.8
HanXRQChr01g0028611 Helianthus annuus HOM05D001021 ORTHO05D000894 2.3e-13 78.6 78 52.6
HanXRQChr17g0565401 Helianthus annuus HOM05D001021 ORTHO05D000894 2.3e-13 78.6 78 52.6
Thecc.01G153200 Theobroma cacao HOM05D001021 ORTHO05D000894 2.3e-13 78.6 78 53.8
Cpa.g.sc52.159 Carica papaya HOM05D001021 ORTHO05D000894 3.0e-13 78.2 78 52.6
Gohir.D09G003300 Gossypium hirsutum HOM05D001021 ORTHO05D000894 3.0e-13 78.2 77 54.5
Gorai.006G004600 Gossypium raimondii HOM05D001021 ORTHO05D000894 3.0e-13 78.2 77 54.5
Lsat_1_v5_gn_4_26660 Lactuca sativa HOM05D001021 ORTHO05D000894 3.0e-13 78.2 77 53.2
Os06g0548000 Oryza sativa ssp. japonica HOM05D001021 ORTHO05D000894 3.0e-13 78.2 77 54.5
Sc12g0003640 Simmondsia chinensis HOM05D001021 ORTHO05D000894 3.0e-13 78.2 78 52.6
unitig_85.g27378 Utricularia gibba HOM05D001021 ORTHO05D000894 3.0e-13 78.2 77 54.5
CAN.G1360.20 Capsicum annuum HOM05D001021 ORTHO05D000894 3.9e-13 77.8 78 52.6
Cc05_g08500 Coffea canephora HOM05D001021 ORTHO05D000894 3.9e-13 77.8 75 54.7
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 3.9e-13 77.8 78 51.3
CsaV3_1G013270 Cucumis sativus L. HOM05D001021 ORTHO05D000894 5.1e-13 77.4 78 52.6
SGA_v2.0_scaffold4G02109 Striga asiatica HOM05D001021 ORTHO05D000894 5.1e-13 77.4 77 53.2
MD17G1264900 Malus domestica HOM05D001021 ORTHO05D000894 6.7e-13 77.0 78 52.6
Peaxi162Scf00469g00531 Petunia axillaris HOM05D001021 ORTHO05D000894 6.7e-13 77.0 78 52.6
RcHm_v2.0_Chr2g0130551 Rosa chinensis HOM05D001021 ORTHO05D000894 6.7e-13 77.0 78 53.8
PGSC0003DMG400020416 Solanum tuberosum HOM05D001021 ORTHO05D000894 6.7e-13 77.0 78 52.6
GSVIVG01020739001 Vitis vinifera HOM05D001021 ORTHO05D000894 6.7e-13 77.0 78 52.6
FvH4_6g27650 Fragaria vesca HOM05D001021 ORTHO05D000894 8.7e-13 76.6 78 53.8
FAN14G2980 Fragaria x ananassa HOM05D001021 ORTHO05D000894 8.7e-13 76.6 78 53.8
Gohir.A09G003700 Gossypium hirsutum HOM05D001021 ORTHO05D000894 8.7e-13 76.6 77 53.2
Solyc07g055210.3 Solanum lycopersicum HOM05D001021 ORTHO05D000894 8.7e-13 76.6 78 52.6
Prupe.3G115000 Prunus persica HOM05D001021 ORTHO05D000894 1.1e-12 76.3 78 52.6
MSTRG.12829 Avicennia marina HOM05D001021 ORTHO05D000894 1.5e-12 75.9 75 53.3
COL.COLO4_04281 Corchorus olitorius HOM05D001021 ORTHO05D000894 1.5e-12 75.9 78 52.6
COL.COLO4_33607 Corchorus olitorius HOM05D001021 ORTHO05D000894 1.5e-12 75.9 78 52.6
MELO3C004980.2 Cucumis melo HOM05D001021 ORTHO05D000894 1.5e-12 75.9 78 51.3
Migut.H02142 Erythranthe guttata HOM05D001021 ORTHO05D000894 1.5e-12 75.9 78 51.3
Sed0022267 Sechium edule HOM05D001021 ORTHO05D000894 1.5e-12 75.9 78 51.3
CiPaw.04G134300 Carya illinoinensis HOM05D001021 ORTHO05D000894 1.9e-12 75.5 78 51.3
Eucgr.A01927 Eucalyptus grandis HOM05D001021 ORTHO05D000894 1.9e-12 75.5 78 52.6
Hma1.2p1_0178F.1_g078600 Hydrangea macrophylla HOM05D001021 ORTHO05D000894 1.9e-12 75.5 78 52.6
Nitab4.5_0009811g0010 Nicotiana tabacum HOM05D001021 ORTHO05D000894 1.9e-12 75.5 78 51.3
FAN09G2104 Fragaria x ananassa HOM05D001021 ORTHO05D000894 2.5e-12 75.1 78 52.6
MBI07_g09552_MAGBIO Magnolia biondii HOM05D001021 ORTHO05D000894 2.5e-12 75.1 78 52.6
Nn3g21128 Nelumbo nucifera HOM05D001021 ORTHO05D000894 2.5e-12 75.1 74 54.1
Potri.014G143300 Populus trichocarpa HOM05D001021 ORTHO05D000894 2.5e-12 75.1 75 56.0
BcaB06g28468 Brassica carinata HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 50.0
A04p23670 Brassica napus HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 50.0
C04p60120 Brassica napus HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 50.0
BolC4t27515H Brassica oleracea HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 50.0
BraA04t17893Z Brassica rapa HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 50.0
CANSAT64G2429 Cannabis sativa HOM05D001021 ORTHO05D000894 3.3e-12 74.7 77 51.9
CiPaw.03G192400 Carya illinoinensis HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 51.3
Ciclev10015347m.g Citrus clementina HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 50.0
QL08p042224 Quercus lobata HOM05D001021 ORTHO05D000894 3.3e-12 74.7 78 52.6
TAR627G0984 Trochodendron aralioides HOM05D001021 ORTHO05D000894 4.3e-12 74.3 78 51.3
CSS0031565 Camellia sinensis var. sinensis HOM05D001021 ORTHO05D000894 5.6e-12 73.9 78 51.3
Sopen07g027020 Solanum pennellii HOM05D001021 ORTHO05D000894 5.6e-12 73.9 78 51.3
Atru.chr6.2765 Acer truncatum HOM05D001021 ORTHO05D000894 7.4e-12 73.6 78 50.0
Lj1A678T29 Lonicera japonica HOM05D001021 ORTHO05D000894 7.4e-12 73.6 78 51.3
AL4G26000 Arabidopsis lyrata HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
AT2G30970 Arabidopsis thaliana HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
BcaB06g28398 Brassica carinata HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
A05p14670 Brassica napus HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
BraA05t20396Z Brassica rapa HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
Carub.0004s1219 Capsella rubella HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
Haze_13426 Corylus avellana HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 50.0
Dinv12375 Davidia involucrata HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 50.0
Thhalv10016781m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
PSO063G1314 Papaver somniferum HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 50.0
Sp4g13460 Schrenkiella parvula HOM05D001021 ORTHO05D000894 9.6e-12 73.2 78 48.7
Thhalv10016910m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 1.3e-11 72.8 80 50.0
THA.LOC104800835 Tarenaya hassleriana HOM05D001021 ORTHO05D000894 1.3e-11 72.8 75 50.7
TWI59G0535 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 1.3e-11 72.8 78 48.7
Ah.01g004960 Amaranthus hybridus HOM05D001021 ORTHO05D000894 1.6e-11 72.4 78 50.0
EL10Ac9g20980 Beta vulgaris HOM05D001021 ORTHO05D000894 1.6e-11 72.4 78 50.0
Thhalv10017805m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 1.6e-11 72.4 74 50.0
Os02g0236000 Oryza sativa ssp. japonica HOM05D001021 ORTHO05D000894 1.6e-11 72.4 77 50.6
BcaB02g10356 Brassica carinata HOM05D001021 ORTHO05D000894 2.1e-11 72.0 78 47.4
PSO782G5148 Papaver somniferum HOM05D001021 ORTHO05D000894 2.1e-11 72.0 78 48.7
DCAR_021296 Daucus carota HOM05D001021 ORTHO05D000894 2.8e-11 71.6 77 49.4
Thhalv10016690m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 2.8e-11 71.6 78 47.4
Thhalv10017631m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 2.8e-11 71.6 78 47.4
PGR142G2042 Punica granatum HOM05D001021 ORTHO05D000894 2.8e-11 71.6 78 50.0
CSS0041167 Camellia sinensis var. sinensis HOM05D001021 ORTHO05D000894 3.7e-11 71.2 78 50.0
CARHR124490 Cardamine hirsuta HOM05D001021 ORTHO05D000894 3.7e-11 71.2 78 47.4
CBR_g34329 Chara braunii HOM05D001021 ORTHO05D000894 3.7e-11 71.2 78 47.4
Sabra14G0108300 Salix brachista HOM05D001021 ORTHO05D000894 3.7e-11 71.2 74 52.7
Aa31LG5G5920 Aethionema arabicum HOM05D001021 ORTHO05D000894 4.8e-11 70.9 78 47.4
ATR0127G022 Amborella trichopoda HOM05D001021 ORTHO05D000894 4.8e-11 70.9 75 50.7
HPP92_024047 Vanilla planifolia HOM05D000406 ORTHO05D003425 4.8e-11 70.9 74 51.4
Aqoxy4G00282 Aquilegia oxysepala HOM05D001021 ORTHO05D000894 8.1e-11 70.1 78 48.7
arahy.Tifrunner.gnm1.ann1.0T6MFC Arachis hypogaea HOM05D001021 ORTHO05D000894 1.1e-10 69.7 78 47.4
arahy.Tifrunner.gnm1.ann1.8VD46W Arachis hypogaea HOM05D001021 ORTHO05D000894 1.1e-10 69.7 78 47.4
Lalb_Chr01g0006031 Lupinus albus HOM05D001021 ORTHO05D000894 1.1e-10 69.7 78 50.0
Lj3g0006940 Lotus japonicus HOM05D001021 ORTHO05D000894 2.4e-10 68.6 78 48.7
Manes.08G172500 Manihot esculenta HOM05D001021 ORTHO05D000894 2.4e-10 68.6 74 47.3
Glyma.06G275700 Glycine max HOM05D001021 ORTHO05D000894 3.1e-10 68.2 78 47.4
Lalb_Chr19g0134861 Lupinus albus HOM05D001021 ORTHO05D000894 3.1e-10 68.2 78 48.7
TAR623G1757 Trochodendron aralioides HOM05D001021 ORTHO05D000894 3.1e-10 68.2 78 46.2
COL.COLO4_30001 Corchorus olitorius HOM05D001021 ORTHO05D000894 4.0e-10 67.8 75 49.3
TPR.G21966 Trifolium pratense HOM05D001021 ORTHO05D000894 9.0e-10 66.6 78 46.2
Thhalv10017723m.g Eutrema salsugineum HOM05D001021 ORTHO05D000894 1.2e-09 66.2 75 46.7
GSVIVG01030218001 Vitis vinifera HOM05D001021 ORTHO05D000894 1.2e-09 66.2 77 45.5
BcaC02g11184 Brassica carinata HOM05D001021 ORTHO05D000894 1.5e-09 65.9 78 47.4
C04p19520 Brassica napus HOM05D001021 ORTHO05D000894 1.5e-09 65.9 78 47.4
Cfa017064 Carpinus fangiana HOM05D001021 ORTHO05D000894 1.5e-09 65.9 77 45.5
Ca_18864_v3 Cicer arietinum L. HOM05D001021 ORTHO05D000894 1.5e-09 65.9 78 46.2
Medtr4g080130 Medicago truncatula HOM05D001021 ORTHO05D000894 2.0e-09 65.5 78 46.2
Medtr4g080140 Medicago truncatula HOM05D001021 ORTHO05D000894 2.0e-09 65.5 78 46.2
Ciclev10011760m.g Citrus clementina HOM05D001021 ORTHO05D000894 2.6e-09 65.1 74 45.9
CDE04G0340 Ceratophyllum demersum HOM05D001021 ORTHO05D000894 4.5e-09 64.3 74 44.6
CSS0017097 Camellia sinensis var. sinensis HOM05D001021 ORTHO05D000894 7.6e-09 63.5 77 44.2
Haze_21137 Corylus avellana HOM05D001021 ORTHO05D000894 7.6e-09 63.5 77 45.5
Nn2g13332 Nelumbo nucifera HOM05D001021 ORTHO05D000894 7.6e-09 63.5 74 45.9
PRCOL_00002831 Prasinoderma coloniale HOM05D001021 ORTHO05D000894 1.0e-08 63.2 77 42.9
Haze_21143 Corylus avellana HOM05D001021 ORTHO05D000894 1.7e-08 62.4 77 45.5
Eucgr.K01272 Eucalyptus grandis HOM05D001021 ORTHO05D000894 1.7e-08 62.4 78 39.7
Thecc.04G155400 Theobroma cacao HOM05D001021 ORTHO05D000894 1.7e-08 62.4 75 46.7
Nn2g11096 Nelumbo nucifera HOM05D001021 ORTHO05D000894 2.2e-08 62.0 74 44.6
Atru.chr8.2369 Acer truncatum HOM05D001021 ORTHO05D000894 2.9e-08 61.6 78 41.0
CiPaw.10G163700 Carya illinoinensis HOM05D001021 ORTHO05D000894 2.9e-08 61.6 73 42.5
CANSAT35G0588 Cannabis sativa HOM05D001021 ORTHO05D000894 3.8e-08 61.2 72 41.7
QL07p032803 Quercus lobata HOM05D001021 ORTHO05D000894 3.8e-08 61.2 77 42.9
VMungo1127G0221 Vigna mungo HOM05D001021 ORTHO05D000894 3.8e-08 61.2 78 43.6
Phvul.011G127800 Phaseolus vulgaris HOM05D001021 ORTHO05D000894 4.9e-08 60.8 78 43.6
Nitab4.5_0000249g0160 Nicotiana tabacum HOM05D001021 ORTHO05D000894 8.4e-08 60.1 64 50.0
Sopen10g027650 Solanum pennellii HOM05D001021 ORTHO05D000894 8.4e-08 60.1 73 41.1
Actinidia29049 Actinidia chinensis HOM05D001021 ORTHO05D000894 1.9e-07 58.9 73 42.5
PGR004G2592 Punica granatum HOM05D001021 ORTHO05D000894 1.9e-07 58.9 75 41.3
Sabra06G0083300 Salix brachista HOM05D001021 ORTHO05D000894 2.5e-07 58.5 73 43.8
MELO3C026051.2 Cucumis melo HOM05D001021 ORTHO05D000894 3.2e-07 58.2 75 40.0
Duzib151G0032 Durio zibethinus HOM05D001021 ORTHO05D000894 3.2e-07 58.2 67 46.3
CAN.G604.2 Capsicum annuum HOM05D001021 ORTHO05D000894 4.2e-07 57.8 73 42.5
Dinv25305 Davidia involucrata HOM05D001021 ORTHO05D000894 4.2e-07 57.8 77 40.3
Gohir.A10G149132 Gossypium hirsutum HOM05D001021 ORTHO05D000894 5.5e-07 57.4 75 42.7
PGSC0003DMG400006678 Solanum tuberosum HOM05D001021 ORTHO05D000894 5.5e-07 57.4 71 42.3
THA.LOC104799572 Tarenaya hassleriana HOM05D001021 ORTHO05D000894 9.3e-07 56.6 77 39.0
TAR624G0277 Trochodendron aralioides HOM05D001021 ORTHO05D000894 9.3e-07 56.6 51 52.9
Gorai.011G129600 Gossypium raimondii HOM05D001021 ORTHO05D000894 2.1e-06 55.5 75 41.3
CsaV3_4G027010 Cucumis sativus L. HOM05D001021 ORTHO05D000894 3.5e-06 54.7 75 38.7
HPP92_024052 Vanilla planifolia HOM05D001021 ORTHO05D000894 3.5e-06 54.7 43 62.8
CDE12G0755 Ceratophyllum demersum HOM05D001021 ORTHO05D000894 4.6e-06 54.3 75 41.3


User provided reference genes

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