Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 2.6e-86 322.0 159 100.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.8e-39 166.4 139 55.4
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 6.8e-39 164.5 139 54.0
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 8.9e-39 164.1 153 50.3
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.5e-38 163.3 140 55.0
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.5e-38 163.3 139 53.2
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 7.5e-38 161.0 154 51.3
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.3e-37 160.2 139 51.8
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 2.2e-37 159.5 154 50.6
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.2e-37 159.5 139 51.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.9e-37 159.1 139 51.8
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 8.3e-37 157.5 143 53.1
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 8.3e-37 157.5 136 58.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.1e-36 157.1 140 52.1
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.1e-36 157.1 139 51.1
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.9e-36 156.4 139 53.2
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.4e-36 156.0 139 51.1
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.4e-36 156.0 139 52.5
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.2e-36 155.6 139 51.1
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.2e-36 155.6 139 51.1
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 3.2e-36 155.6 139 53.2
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.2e-36 155.6 148 47.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.2e-36 155.6 139 51.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.2e-36 155.6 139 51.8
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-36 155.2 139 51.1
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-36 155.2 139 51.1
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-36 155.2 139 51.1
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.1e-36 155.2 139 51.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 4.1e-36 155.2 139 51.8
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 5.4e-36 154.8 139 51.8
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.4e-36 154.8 139 51.8
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.1e-36 154.5 139 49.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 7.1e-36 154.5 139 50.4
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 9.2e-36 154.1 139 53.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 9.2e-36 154.1 143 50.3
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-35 153.7 182 45.6
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-35 153.7 182 45.6
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.2e-35 153.7 139 50.4
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.2e-35 153.7 139 52.5
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.2e-35 153.7 139 50.4
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.6e-35 153.3 139 50.4
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.6e-35 153.3 139 50.4
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.6e-35 153.3 139 51.8
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.7e-35 152.5 140 50.7
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 3.5e-35 152.1 139 51.1
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 4.6e-35 151.8 139 49.6
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.6e-35 151.8 182 45.1
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.0e-35 151.4 140 50.7
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 6.0e-35 151.4 139 50.4
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.8e-35 151.0 144 47.2
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.0e-34 150.6 144 47.2
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.0e-34 150.6 145 46.9
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.0e-34 150.6 139 50.4
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.3e-34 150.2 139 51.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.3e-34 150.2 139 51.1
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.3e-34 150.2 139 49.6
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.3e-34 150.2 137 51.8
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.7e-34 149.8 139 50.4
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.7e-34 149.8 139 47.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.7e-34 149.8 139 51.1
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.7e-34 149.8 140 47.9
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.7e-34 149.8 139 48.9
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.7e-34 149.8 139 50.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.3e-34 149.4 139 51.1
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.3e-34 149.4 139 51.1
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.3e-34 149.4 139 50.4
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 3.0e-34 149.1 148 44.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 3.0e-34 149.1 133 51.9
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.9e-34 148.7 139 49.6
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.1e-34 148.3 115 56.5
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 5.1e-34 148.3 141 47.5
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 5.1e-34 148.3 139 47.5
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 5.1e-34 148.3 141 47.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 5.1e-34 148.3 139 47.5
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 5.1e-34 148.3 152 48.7
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.1e-34 148.3 139 49.6
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 6.6e-34 147.9 141 47.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 6.6e-34 147.9 139 47.5
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 6.6e-34 147.9 139 47.5
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 6.6e-34 147.9 141 47.5
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 6.6e-34 147.9 139 47.5
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 6.6e-34 147.9 141 47.5
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 6.6e-34 147.9 139 47.5
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 6.6e-34 147.9 139 49.6
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 8.6e-34 147.5 139 48.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.6e-34 147.5 115 59.1
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 8.6e-34 147.5 139 48.2
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.1e-33 147.1 139 46.8
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.1e-33 147.1 139 46.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.1e-33 147.1 139 47.5
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-33 147.1 139 47.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.1e-33 147.1 140 49.3
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.5e-33 146.7 144 46.5
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.9e-33 146.4 139 49.6
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.9e-33 146.4 139 49.6
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 2.5e-33 146.0 141 46.8
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 3.3e-33 145.6 139 50.4
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 4.3e-33 145.2 139 48.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.3e-33 145.2 139 50.4
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.3e-33 145.2 139 46.0
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 5.6e-33 144.8 139 49.6
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 9.5e-33 144.1 139 47.5
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 9.5e-33 144.1 141 47.5
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.2e-32 143.7 139 48.2
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.6e-32 142.1 139 48.9
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.7e-32 141.7 120 55.0
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 6.2e-32 141.4 144 47.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.8e-31 139.8 163 43.6
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.2e-30 137.1 176 40.9
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.0e-30 136.3 144 47.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 3.4e-30 135.6 109 54.1
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.1e-28 130.6 119 52.1
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.2e-28 129.0 191 40.8
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.7e-27 125.9 186 37.1
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 4.6e-27 125.2 197 36.5
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.0e-26 124.0 156 43.6
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 6.6e-26 121.3 165 41.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.9e-25 119.8 143 42.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 8.1e-24 114.4 232 31.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.4e-23 113.6 109 48.6
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.8e-23 113.2 113 42.5
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 3.1e-23 112.5 125 41.6
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.6e-22 109.4 139 40.3
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 7.6e-22 107.8 104 51.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 7.1e-20 101.3 77 61.0
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.2e-19 100.5 110 38.2
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.6e-19 98.6 109 42.2
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 5.1e-18 95.1 99 46.5
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 5.1e-18 95.1 99 46.5
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 4.0e-15 85.5 114 40.4
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.6e-14 82.8 61 63.9
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-14 82.8 59 67.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.9e-13 79.3 94 38.3
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 3.8e-13 79.0 113 37.2
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 8.4e-13 77.8 57 63.2
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.1e-12 77.4 82 41.5
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.9e-12 76.6 59 61.0
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 3.2e-12 75.9 59 57.6
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 6.0e-11 71.6 87 36.8
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.9e-09 66.6 85 34.1
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.3e-09 65.9 80 36.2
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 9.6e-09 64.3 47 61.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.6e-08 63.5 68 39.7
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 3.1e-07 59.3 80 35.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 6.9e-07 58.2 68 35.3
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 9.0e-07 57.8 59 40.7
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.0e-06 56.6 106 36.8


User provided reference genes

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