Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_4690 Physcomitrium patens HOM05D015612 ORTHO05D003481 0.0e+00 1510.0 889 100.0
Pp3c10_3690 Physcomitrium patens HOM05D015612 ORTHO05D003481 1.0e-144 518.5 783 50.8
AagrBONN_evm.TU.Sc2ySwM_369.261 Anthoceros agrestis HOM05D015612 ORTHO05D003481 4.9e-62 243.8 264 47.7
Pp3c2_1560 Physcomitrium patens HOM05D015612 ORTHO05D050301 6.1e-52 210.3 495 34.7
CBR_g24294 Chara braunii HOM05D015612 ORTHO05D003481 1.3e-46 192.6 236 40.7
SMO170G0018 Selaginella moellendorffii HOM05D003177 ORTHO05D003481 3.3e-42 177.9 696 29.7
Mapoly0011s0128 Marchantia polymorpha HOM05D015612 ORTHO05D003481 6.9e-40 170.2 555 41.8
AagrBONN_evm.TU.Sc2ySwM_369.263 Anthoceros agrestis HOM05D015612 ORTHO05D003481 1.5e-34 152.5 151 50.3
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.9e-29 135.6 716 21.4
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 3.2e-29 134.8 638 27.4
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 4.4e-26 124.4 638 27.3
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 1.7e-25 122.5 640 20.9
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 2.2e-25 122.1 785 20.6
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.2e-25 122.1 636 20.9
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 2.2e-25 122.1 672 19.6
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 2.8e-25 121.7 668 20.8
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.1e-24 118.2 629 21.0
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.1e-24 118.2 652 20.7
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.2e-23 116.3 681 20.4
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 2.0e-23 115.5 252 31.0
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 3.5e-23 114.8 639 20.7
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 3.5e-23 114.8 633 21.5
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.9e-23 114.0 641 20.9
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 7.7e-23 113.6 631 26.9
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.2e-22 112.1 640 20.8
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 2.2e-22 112.1 817 25.7
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 8.5e-22 110.2 642 28.8
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.5e-21 109.4 653 20.1
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.9e-21 109.0 641 20.3
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.9e-21 109.0 655 23.5
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.5e-21 108.6 636 20.9
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 7.2e-21 107.1 672 27.7
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 7.2e-21 107.1 729 19.6
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 1.6e-20 105.9 644 20.5
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 2.1e-20 105.5 648 20.8
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 3.6e-20 104.8 648 19.9
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 3.6e-20 104.8 643 19.8
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 3.6e-20 104.8 672 27.5
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 8.0e-20 103.6 734 28.5
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.0e-19 103.2 659 19.4
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 1.4e-19 102.8 644 26.7
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.8e-19 102.4 637 19.9
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.8e-19 102.4 716 20.1
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 1.8e-19 102.4 640 27.7
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.3e-19 102.1 674 28.0
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 5.2e-19 100.9 658 26.7
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 5.2e-19 100.9 252 29.4
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 5.2e-19 100.9 637 19.5
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 8.8e-19 100.1 640 25.0
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 8.8e-19 100.1 251 27.9
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 1.2e-18 99.8 638 27.1
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 1.5e-18 99.4 636 27.5
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 3.4e-18 98.2 615 20.2
Pp3c2_1540 Physcomitrium patens HOM05D015612 ORTHO05D050301 3.4e-18 98.2 55 78.2
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 4.4e-18 97.8 648 20.7
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 5.7e-18 97.4 229 30.1
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 4.8e-17 94.4 644 19.9
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-16 93.2 874 20.1
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.1e-16 93.2 252 28.6
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.1e-16 93.2 252 24.6
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.1e-16 91.7 656 19.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 3.1e-16 91.7 655 18.8
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 5.4e-16 90.9 228 27.2
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 5.4e-16 90.9 228 27.2
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 5.4e-16 90.9 667 22.0
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 7.0e-16 90.5 252 27.0
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 7.0e-16 90.5 637 19.9
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 7.0e-16 90.5 229 27.9
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.2e-15 89.7 618 25.4
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.6e-15 89.4 639 18.6
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.5e-15 88.2 639 26.1
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 3.5e-15 88.2 640 25.3
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 5.9e-15 87.4 252 26.2
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 7.7e-15 87.0 647 18.5
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 7.7e-15 87.0 748 19.8
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 1.3e-14 86.3 248 24.2
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.7e-14 85.9 238 26.9
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.9e-14 85.1 613 28.1
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 5.0e-14 84.3 260 25.8
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 6.5e-14 84.0 637 19.9
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 6.5e-14 84.0 229 28.8
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 6.5e-14 84.0 253 26.1
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 8.5e-14 83.6 252 25.4
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 8.5e-14 83.6 646 19.5
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.5e-13 82.8 384 21.9
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 1.5e-13 82.8 247 27.1
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.5e-13 82.8 556 20.0
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 4.2e-13 81.3 633 19.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-12 79.7 637 20.1
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 1.2e-12 79.7 242 29.3
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 1.6e-12 79.3 649 20.8
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.6e-12 79.3 229 26.2
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 3.6e-12 78.2 666 17.1
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 6.1e-12 77.4 620 19.5
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 8.0e-12 77.0 639 18.5
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 1.4e-11 76.3 667 19.6
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.8e-11 75.9 278 25.5
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.3e-11 75.5 633 17.9
CSS0045541 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.6e-10 72.0 327 21.1
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 6.3e-09 67.4 727 25.7
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.4e-08 65.5 138 31.9
Actinidia27553 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.1e-08 64.7 348 22.4
QL02p091796 Quercus lobata HOM05D000001 ORTHO05D009582 9.2e-08 63.5 316 23.1
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.0e-07 62.4 185 27.6
Ca_17259_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.3e-06 59.7 357 20.7
Ca_17281_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.3e-06 59.7 357 20.7
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-06 59.7 201 22.4
EL10Ac4g09353 Beta vulgaris HOM05D000001 ORTHO05D009582 2.3e-06 58.9 314 22.6
Lj1g0022372 Lotus japonicus HOM05D000001 ORTHO05D009582 2.3e-06 58.9 291 24.7
Oeu044735.1 Olea europaea HOM05D004127 ORTHO05D005119 2.3e-06 58.9 135 31.1
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 2.9e-06 58.5 153 26.1
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 3.8e-06 58.2 314 22.3
Duzib235G0962 Durio zibethinus HOM05D000001 ORTHO05D000003 3.8e-06 58.2 344 21.8
SMO147G0202 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 3.8e-06 58.2 386 22.0
PGSC0003DMG400046223 Solanum tuberosum HOM05D000001 ORTHO05D000003 3.8e-06 58.2 176 26.1
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 3.8e-06 58.2 160 29.4
Ca_09357_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009582 5.0e-06 57.8 323 21.7
Ciclev10019244m.g Citrus clementina HOM05D000001 ORTHO05D010669 5.0e-06 57.8 125 24.8
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 5.0e-06 57.8 136 25.7
Lalb_Chr11g0073401 Lupinus albus HOM05D000001 ORTHO05D000003 5.0e-06 57.8 362 21.3
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 5.0e-06 57.8 111 25.2
CANSAT56G3818 Cannabis sativa HOM05D000001 ORTHO05D000003 6.6e-06 57.4 193 25.4
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 8.6e-06 57.0 314 19.1


User provided reference genes

Program Settings