Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.6e-225 785.0 381 100.0
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.3e-132 475.7 365 60.3
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 3.7e-131 472.2 327 65.7
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.8e-131 471.9 363 60.1
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.4e-130 469.5 327 65.1
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.4e-130 469.5 363 61.7
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 4.0e-130 468.8 358 60.9
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.2e-129 467.2 375 60.3
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.5e-129 466.8 366 60.1
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.4e-129 465.7 363 59.8
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 5.8e-129 464.9 363 59.8
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 1.0e-128 464.2 363 59.8
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.0e-128 464.2 377 58.1
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.3e-128 463.8 372 58.3
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 2.2e-128 463.0 363 60.6
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 2.2e-128 463.0 363 59.2
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 4.9e-128 461.8 362 59.9
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 6.5e-128 461.5 363 61.2
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.1e-127 460.7 363 60.1
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 1.1e-127 460.7 363 60.1
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.4e-127 460.3 363 60.3
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.9e-127 459.9 363 59.2
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.9e-127 459.9 361 58.7
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 4.2e-127 458.8 365 58.6
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 4.2e-127 458.8 363 57.9
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 5.5e-127 458.4 362 58.6
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 5.5e-127 458.4 361 59.3
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 7.1e-127 458.0 363 57.9
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 9.3e-127 457.6 361 59.3
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 9.3e-127 457.6 372 58.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.2e-126 457.2 363 60.1
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.2e-126 457.2 363 59.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.2e-126 457.2 363 59.0
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.2e-126 457.2 363 58.1
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 2.7e-126 456.1 363 56.7
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.5e-126 455.7 326 63.8
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 4.6e-126 455.3 363 60.1
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 4.6e-126 455.3 363 57.3
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 7.9e-126 454.5 396 54.5
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.0e-125 454.1 368 59.2
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-125 453.4 363 58.4
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.3e-125 453.0 361 58.2
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.9e-125 452.2 363 58.4
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.1e-125 451.8 363 58.4
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 6.7e-125 451.4 372 57.8
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 6.7e-125 451.4 327 61.5
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 8.7e-125 451.1 362 58.6
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 8.7e-125 451.1 358 57.8
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 1.5e-124 450.3 364 58.2
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 4.3e-124 448.7 363 56.7
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 5.7e-124 448.4 363 57.9
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 7.4e-124 448.0 383 56.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 9.7e-124 447.6 377 57.6
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 2.2e-123 446.4 372 57.5
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.1e-122 444.1 383 55.9
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.1e-122 444.1 367 60.2
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.1e-122 442.6 328 61.9
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 6.9e-122 441.4 327 61.2
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 6.9e-122 441.4 377 58.1
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.6e-121 439.5 327 60.6
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.4e-121 439.1 372 57.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.0e-120 437.6 363 58.7
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 3.8e-120 435.6 365 57.8
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.9e-119 433.3 363 57.6
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.2e-119 432.2 364 58.2
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 7.2e-119 431.4 368 56.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.2e-118 430.6 363 57.9
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.6e-118 429.1 363 57.0
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 4.6e-118 428.7 373 58.2
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.0e-117 427.6 365 57.5
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.4e-117 427.2 363 57.9
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 3.0e-117 426.0 329 60.8
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 5.1e-117 425.2 328 61.3
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.5e-116 423.7 365 56.2
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 5.7e-116 421.8 338 59.2
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.3e-115 420.6 363 56.2
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 2.2e-115 419.9 356 56.7
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.8e-115 419.5 363 56.5
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.2e-113 414.1 363 55.4
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 2.9e-112 409.5 334 58.4
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.4e-111 407.1 404 51.5
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.3e-107 394.0 344 56.7
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.3e-104 384.0 338 54.4
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 5.0e-104 382.1 372 51.9
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 3.9e-101 372.5 368 52.4
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 4.4e-100 369.0 365 51.0
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.3e-99 367.5 355 51.0
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.8e-99 366.3 325 53.5
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 4.2e-95 352.4 363 48.5
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 7.2e-95 351.7 529 38.9
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.4e-93 347.4 336 52.4
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 4.5e-89 332.4 337 48.7
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 7.7e-89 331.6 346 51.2
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.1e-86 323.6 362 47.8
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 4.7e-86 322.4 366 47.8
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.7e-80 303.9 366 44.5
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.7e-78 295.8 327 47.7
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.4e-76 289.3 219 59.8
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.3e-75 287.7 218 62.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.2e-75 287.0 226 59.7
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 3.7e-75 286.2 316 49.4
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 3.7e-75 286.2 366 42.9
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 1.4e-74 284.3 214 62.1
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.4e-74 283.5 214 61.7
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.2e-74 283.1 367 43.9
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 4.1e-74 282.7 217 60.8
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 9.2e-74 281.6 218 60.1
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 4.5e-73 279.3 218 58.3
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 5.9e-73 278.9 218 60.1
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 3.4e-60 236.5 327 39.8
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.1e-58 231.5 302 42.7
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 8.6e-56 221.9 364 37.4
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.3e-55 219.9 152 65.1
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 7.6e-52 208.8 362 37.6
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.9e-52 208.4 150 62.7
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.9e-52 208.4 150 62.7
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.2e-51 207.2 361 36.3
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.9e-50 204.1 150 61.3
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 3.1e-45 186.8 294 36.4
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 7.6e-44 182.2 327 34.9
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 5.4e-42 176.0 141 56.7
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 6.0e-41 172.6 174 48.9
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 7.1e-34 149.1 95 68.4
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.7e-27 127.9 112 54.5
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 3.2e-26 123.6 112 50.0
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 7.1e-26 122.5 116 47.4
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.6e-25 121.3 115 47.8
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 1.0e-24 118.6 115 46.1
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.4e-21 107.5 98 55.1
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.2e-20 105.1 177 40.1
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 2.9e-19 100.5 117 41.0
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.8e-14 84.0 86 48.8
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 1.8e-13 81.3 97 45.4
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 5.3e-13 79.7 90 45.6
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.2e-11 74.3 48 60.4
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.5e-11 72.8 69 44.9
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.9e-09 65.9 45 66.7
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 2.3e-08 64.3 32 81.2


User provided reference genes

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