Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_4320 Physcomitrium patens HOM05D002959 ORTHO05D003237 1.6e-89 332.8 172 100.0
Mapoly0073s0024 Marchantia polymorpha HOM05D002959 ORTHO05D003237 1.6e-33 146.7 149 47.7
AagrBONN_evm.TU.Sc2ySwM_228.470 Anthoceros agrestis HOM05D002959 ORTHO05D003237 1.5e-31 140.2 158 45.6
SMO117G0293 Selaginella moellendorffii HOM05D002959 ORTHO05D003237 9.7e-31 137.5 148 49.3
Cre01.g050000 Chlamydomonas reinhardtii HOM05D002959 ORTHO05D003237 2.7e-17 92.8 156 37.2
Eucgr.A01714 Eucalyptus grandis HOM05D002959 ORTHO05D003237 2.6e-15 86.3 158 38.0
MCO15G630 Micromonas commoda HOM05D002959 ORTHO05D003237 2.6e-15 86.3 153 34.6
ATR0752G073 Amborella trichopoda HOM05D002959 ORTHO05D003237 2.8e-14 82.8 158 36.1
AL4G27760 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 3.1e-13 79.3 136 35.3
AUR62037134 Chenopodium quinoa HOM05D002959 ORTHO05D003237 4.1e-13 79.0 158 34.2
AL4G27750 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 1.2e-12 77.4 136 34.6
AT1G05210 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 1.2e-12 77.4 127 35.4
AT2G32380 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 1.2e-12 77.4 136 33.8
Thhalv10008934m.g Eutrema salsugineum HOM05D002959 ORTHO05D003237 1.2e-12 77.4 138 36.2
Thhalv10017325m.g Eutrema salsugineum HOM05D002959 ORTHO05D003237 1.5e-12 77.0 136 36.8
Lj1A760T25 Lonicera japonica HOM05D002959 ORTHO05D003237 1.5e-12 77.0 137 37.2
BcaC07g36857 Brassica carinata HOM05D002959 ORTHO05D003237 2.0e-12 76.6 136 33.8
Lj1A759T41 Lonicera japonica HOM05D002959 ORTHO05D003237 2.0e-12 76.6 137 37.2
Potri.009G117800 Populus trichocarpa HOM05D002959 ORTHO05D003237 2.0e-12 76.6 136 36.8
C08p01810 Brassica napus HOM05D002959 ORTHO05D003237 2.6e-12 76.3 136 33.1
BolC8t46981H Brassica oleracea HOM05D002959 ORTHO05D003237 2.6e-12 76.3 136 33.1
AUR62025051 Chenopodium quinoa HOM05D002959 ORTHO05D003237 2.6e-12 76.3 137 38.0
ClCG02G001850 Citrullus lanatus HOM05D002959 ORTHO05D003237 3.4e-12 75.9 156 34.0
Sopen07g026060 Solanum pennellii HOM05D002959 ORTHO05D003237 3.4e-12 75.9 153 34.6
Aa31LG5G4670 Aethionema arabicum HOM05D002959 ORTHO05D003237 4.5e-12 75.5 136 36.0
CDE02G3691 Ceratophyllum demersum HOM05D002959 ORTHO05D003237 4.5e-12 75.5 144 34.0
BraA08t35554Z Brassica rapa HOM05D002959 ORTHO05D003237 5.9e-12 75.1 136 33.1
TPR.G4665 Trifolium pratense HOM05D002959 ORTHO05D003237 5.9e-12 75.1 158 32.3
Zm00001eb305670 Zea mays HOM05D002959 ORTHO05D003237 5.9e-12 75.1 157 32.5
A08p36530 Brassica napus HOM05D002959 ORTHO05D003237 7.7e-12 74.7 136 32.4
PGSC0003DMG400025497 Solanum tuberosum HOM05D002959 ORTHO05D003237 7.7e-12 74.7 153 33.3
CSS0034965 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.0e-11 74.3 158 33.5
Carub.0001s0449 Capsella rubella HOM05D002959 ORTHO05D003237 1.0e-11 74.3 127 33.9
MELO3C018810.2 Cucumis melo HOM05D002959 ORTHO05D003237 1.0e-11 74.3 138 35.5
Solyc07g052440.3 Solanum lycopersicum HOM05D002959 ORTHO05D003237 1.0e-11 74.3 137 34.3
AL1G14980 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 1.3e-11 73.9 127 34.6
CsaV3_7G003690 Cucumis sativus L. HOM05D002959 ORTHO05D003237 1.3e-11 73.9 140 34.3
MD09G1107600 Malus domestica HOM05D002959 ORTHO05D003237 1.3e-11 73.9 159 34.6
Sabra09G0090200 Salix brachista HOM05D002959 ORTHO05D003237 1.3e-11 73.9 136 34.6
Actinidia09710 Actinidia chinensis HOM05D002959 ORTHO05D003237 1.7e-11 73.6 137 38.0
A10p03750 Brassica napus HOM05D002959 ORTHO05D003237 1.7e-11 73.6 119 36.1
BraA10t42648Z Brassica rapa HOM05D002959 ORTHO05D003237 1.7e-11 73.6 119 37.0
CSS0045723 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.7e-11 73.6 158 33.5
CARHR004690 Cardamine hirsuta HOM05D002959 ORTHO05D003237 1.7e-11 73.6 127 35.4
Dinv39701 Davidia involucrata HOM05D002959 ORTHO05D003237 1.7e-11 73.6 137 37.2
Manes.12G075500 Manihot esculenta HOM05D002959 ORTHO05D003237 1.7e-11 73.6 127 33.9
Solyc07g052430.3 Solanum lycopersicum HOM05D002959 ORTHO05D003237 1.7e-11 73.6 153 34.0
Aqoxy1G03306 Aquilegia oxysepala HOM05D002959 ORTHO05D003237 2.2e-11 73.2 158 34.2
BolC5t29124H Brassica oleracea HOM05D002959 ORTHO05D003237 2.2e-11 73.2 119 36.1
Cpa.g.sc4.170 Carica papaya HOM05D002959 ORTHO05D003237 2.2e-11 73.2 158 36.1
Hma1.2p1_0948F.1_g240420 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 2.2e-11 73.2 149 34.2
Hma1.2p1_1768F.1_g301525 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 2.2e-11 73.2 149 34.2
TAR626G0389 Trochodendron aralioides HOM05D002959 ORTHO05D003237 2.2e-11 73.2 158 34.2
EL10Ac9g20667 Beta vulgaris HOM05D002959 ORTHO05D003237 2.9e-11 72.8 136 36.8
C05p03450 Brassica napus HOM05D002959 ORTHO05D003237 2.9e-11 72.8 119 36.1
Carub.0004s1373 Capsella rubella HOM05D002959 ORTHO05D003237 2.9e-11 72.8 136 33.1
Sopen07g026070 Solanum pennellii HOM05D002959 ORTHO05D003237 2.9e-11 72.8 137 34.3
Aa31LG1G19530 Aethionema arabicum HOM05D002959 ORTHO05D003237 3.8e-11 72.4 136 32.4
CARHR126200 Cardamine hirsuta HOM05D002959 ORTHO05D003237 3.8e-11 72.4 136 32.4
Ciclev10016979m.g Citrus clementina HOM05D002959 ORTHO05D003237 3.8e-11 72.4 159 30.2
Cc05_g04870 Coffea canephora HOM05D002959 ORTHO05D003237 3.8e-11 72.4 135 35.6
MD17G1095500 Malus domestica HOM05D002959 ORTHO05D003237 3.8e-11 72.4 146 33.6
Peaxi162Scf00007g00929 Petunia axillaris HOM05D002959 ORTHO05D003237 3.8e-11 72.4 136 33.8
arahy.Tifrunner.gnm1.ann1.X4J0KT Arachis hypogaea HOM05D002959 ORTHO05D003237 5.0e-11 72.0 136 33.8
CANSAT64G0672 Cannabis sativa HOM05D002959 ORTHO05D003237 5.0e-11 72.0 155 34.8
CsaV3_4G005160 Cucumis sativus L. HOM05D002959 ORTHO05D003237 5.0e-11 72.0 158 32.3
FAN09G0349 Fragaria x ananassa HOM05D002959 ORTHO05D003237 5.0e-11 72.0 136 34.6
Lj3g0006213 Lotus japonicus HOM05D002959 ORTHO05D003237 5.0e-11 72.0 136 33.8
Medtr4g047630 Medicago truncatula HOM05D002959 ORTHO05D003237 5.0e-11 72.0 137 35.8
Sp1g04070 Schrenkiella parvula HOM05D002959 ORTHO05D003237 5.0e-11 72.0 135 32.6
SpUn0024_0070 Schrenkiella parvula HOM05D002959 ORTHO05D003237 5.0e-11 72.0 135 32.6
Glyma.12G099900 Glycine max HOM05D002959 ORTHO05D003237 6.5e-11 71.6 136 36.0
Nn1g03594 Nelumbo nucifera HOM05D002959 ORTHO05D003237 6.5e-11 71.6 141 34.8
arahy.Tifrunner.gnm1.ann1.18208U Arachis hypogaea HOM05D002959 ORTHO05D003237 8.5e-11 71.2 136 33.8
CiPaw.03G161200 Carya illinoinensis HOM05D002959 ORTHO05D003237 8.5e-11 71.2 127 34.6
PGSC0003DMG400025496 Solanum tuberosum HOM05D002959 ORTHO05D003237 8.5e-11 71.2 137 33.6
HPP92_010103 Vanilla planifolia HOM05D002959 ORTHO05D003237 8.5e-11 71.2 158 30.4
CANSAT64G1461 Cannabis sativa HOM05D002959 ORTHO05D003237 1.1e-10 70.9 159 32.1
CAN.G846.2 Capsicum annuum HOM05D002959 ORTHO05D003237 1.1e-10 70.9 137 33.6
Ca_26237_v3 Cicer arietinum L. HOM05D002959 ORTHO05D003237 1.1e-10 70.9 136 33.8
Lalb_Chr03g0028761 Lupinus albus HOM05D002959 ORTHO05D003237 1.1e-10 70.9 136 33.8
Psat7g158640 Pisum sativum HOM05D002959 ORTHO05D003237 1.1e-10 70.9 136 33.8
Prupe.3G218100 Prunus persica HOM05D002959 ORTHO05D003237 1.1e-10 70.9 142 35.2
Prupe.3G218400 Prunus persica HOM05D002959 ORTHO05D003237 1.1e-10 70.9 158 33.5
QL08p033321 Quercus lobata HOM05D002959 ORTHO05D003237 1.1e-10 70.9 127 34.6
TAR626G1024 Trochodendron aralioides HOM05D002959 ORTHO05D003237 1.1e-10 70.9 140 35.7
MELO3C017552.2 Cucumis melo HOM05D002959 ORTHO05D003237 1.4e-10 70.5 155 33.5
RcHm_v2.0_Chr2g0159721 Rosa chinensis HOM05D002959 ORTHO05D003237 1.4e-10 70.5 158 31.6
SMO356G0250 Selaginella moellendorffii HOM05D002959 ORTHO05D003237 1.4e-10 70.5 85 40.0
Cfa014417 Carpinus fangiana HOM05D002959 ORTHO05D003237 1.9e-10 70.1 147 34.0
FvH4_6g43380 Fragaria vesca HOM05D002959 ORTHO05D003237 1.9e-10 70.1 136 34.6
Os07g0458700 Oryza sativa ssp. japonica HOM05D002959 ORTHO05D003237 1.9e-10 70.1 157 31.8
AL1G14990 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 3.2e-10 69.3 137 36.5
CAN.G846.4 Capsicum annuum HOM05D002959 ORTHO05D003237 3.2e-10 69.3 140 35.0
DCAR_012948 Daucus carota HOM05D002959 ORTHO05D003237 3.2e-10 69.3 149 32.9
Phvul.011G104500 Phaseolus vulgaris HOM05D002959 ORTHO05D003237 3.2e-10 69.3 136 32.4
PGR042G1226 Punica granatum HOM05D002959 ORTHO05D003237 3.2e-10 69.3 155 34.2
unitig_699.g19615 Utricularia gibba HOM05D000109 ORTHO05D003237 3.2e-10 69.3 136 36.0
Haze_12877 Corylus avellana HOM05D002959 ORTHO05D003237 4.2e-10 68.9 135 32.6
FAN14G2056 Fragaria x ananassa HOM05D002959 ORTHO05D003237 4.2e-10 68.9 136 33.8
Glyma.06G303800 Glycine max HOM05D002959 ORTHO05D003237 4.2e-10 68.9 136 35.3
Sed0004815 Sechium edule HOM05D002959 ORTHO05D003237 4.2e-10 68.9 157 31.2
AT1G05220 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 5.5e-10 68.6 137 36.5
HanXRQChr15g0496411 Helianthus annuus HOM05D002959 ORTHO05D003237 5.5e-10 68.6 157 31.8
MD17G1095300 Malus domestica HOM05D002959 ORTHO05D003237 5.5e-10 68.6 136 33.1
PSO541G0978 Papaver somniferum HOM05D002959 ORTHO05D003237 5.5e-10 68.6 136 36.8
RcHm_v2.0_Chr2g0159661 Rosa chinensis HOM05D002959 ORTHO05D003237 5.5e-10 68.6 156 31.4
SalBow7G4760 Salvia bowleyana HOM05D002959 ORTHO05D003237 5.5e-10 68.6 138 33.3
TPR.G23666 Trifolium pratense HOM05D002959 ORTHO05D003237 5.5e-10 68.6 136 31.6
VMungo1127G2165 Vigna mungo HOM05D002959 ORTHO05D003237 5.5e-10 68.6 136 33.1
MBI18_g10793_MAGBIO Magnolia biondii HOM05D002959 ORTHO05D003237 7.2e-10 68.2 143 30.8
TWI36G0391 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 7.2e-10 68.2 157 30.6
Atru.chr6.3170 Acer truncatum HOM05D002959 ORTHO05D003237 9.4e-10 67.8 141 32.6
COL.COLO4_27696 Corchorus olitorius HOM05D002959 ORTHO05D003237 9.4e-10 67.8 158 31.6
Gohir.D12G159600 Gossypium hirsutum HOM05D002959 ORTHO05D003237 9.4e-10 67.8 143 28.7
Gorai.008G172900 Gossypium raimondii HOM05D002959 ORTHO05D003237 9.4e-10 67.8 143 28.7
MD09G1107500 Malus domestica HOM05D002959 ORTHO05D003237 9.4e-10 67.8 157 29.9
Dinv05448 Davidia involucrata HOM05D002959 ORTHO05D003237 1.2e-09 67.4 137 34.3
FAN05G3149 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.2e-09 67.4 136 33.1
Oeu041931.2 Olea europaea HOM05D002959 ORTHO05D003237 1.2e-09 67.4 137 35.8
MD17G1095800 Malus domestica HOM05D002959 ORTHO05D003237 1.6e-09 67.0 160 33.1
CSS0017236 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.1e-09 66.6 137 35.8
CSS0025283 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 3.6e-09 65.9 138 34.8
FAN02G0167 Fragaria x ananassa HOM05D002959 ORTHO05D003237 3.6e-09 65.9 158 30.4
CSS0022033 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 4.7e-09 65.5 153 32.0
Lsat_1_v5_gn_8_128621 Lactuca sativa HOM05D002959 ORTHO05D003237 4.7e-09 65.5 137 32.1
Manes.13G070900 Manihot esculenta HOM05D002959 ORTHO05D003237 4.7e-09 65.5 136 30.9
ClCG07G009050 Citrullus lanatus HOM05D002959 ORTHO05D003237 6.1e-09 65.1 139 33.8
Gohir.A12G156800 Gossypium hirsutum HOM05D002959 ORTHO05D003237 6.1e-09 65.1 143 27.3
COL.COLO4_27691 Corchorus olitorius HOM05D002959 ORTHO05D003237 8.0e-09 64.7 158 31.0
FAN05G2600 Fragaria x ananassa HOM05D002959 ORTHO05D003237 8.0e-09 64.7 137 32.8
FvH4_6g43330 Fragaria vesca HOM05D002959 ORTHO05D003237 1.0e-08 64.3 137 32.8
FAN14G3479 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.0e-08 64.3 137 32.8
Sed0000729 Sechium edule HOM05D002959 ORTHO05D003237 1.0e-08 64.3 140 30.7
TWI36G0566 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 1.0e-08 64.3 137 34.3
ECA233G6126 Erigeron canadensis HOM05D002959 ORTHO05D003237 1.4e-08 63.9 136 34.6
Migut.M00412 Erythranthe guttata HOM05D002959 ORTHO05D003237 1.8e-08 63.5 137 33.6
Os07g0458500 Oryza sativa ssp. japonica HOM05D002959 ORTHO05D003237 1.8e-08 63.5 156 31.4
THA.LOC104800984 Tarenaya hassleriana HOM05D002959 ORTHO05D003237 1.8e-08 63.5 136 31.6
CSS0016007 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.3e-08 63.2 158 32.3
CSS0022732 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.3e-08 63.2 158 32.3
Rhsim06G0160800 Rhododendron simsii HOM05D002959 ORTHO05D003237 2.3e-08 63.2 136 34.6
TWI36G0789 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 2.3e-08 63.2 127 32.3
FAN09G2165 Fragaria x ananassa HOM05D002959 ORTHO05D003237 3.0e-08 62.8 151 30.5
CSS0001025 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 3.9e-08 62.4 138 33.3
ECA233G1396 Erigeron canadensis HOM05D002959 ORTHO05D003237 3.9e-08 62.4 136 31.6
Nitab4.5_0002137g0130 Nicotiana tabacum HOM05D002959 ORTHO05D003237 5.2e-08 62.0 140 31.4
Sp4g14750 Schrenkiella parvula HOM05D002959 ORTHO05D003237 5.2e-08 62.0 136 30.1
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.2e-08 62.0 132 37.1
Ah.01g014550 Amaranthus hybridus HOM05D002959 ORTHO05D003237 8.8e-08 61.2 141 32.6
HanXRQChr15g0496401 Helianthus annuus HOM05D002959 ORTHO05D003237 8.8e-08 61.2 151 27.8
Hma1.2p1_1768F.1_g301550 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 8.8e-08 61.2 107 35.5
Sc21g0001590 Simmondsia chinensis HOM05D002959 ORTHO05D003237 8.8e-08 61.2 155 28.4
CSS0046576 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 2.0e-07 60.1 154 31.2
PSO675G5378 Papaver somniferum HOM05D002959 ORTHO05D003237 2.0e-07 60.1 101 38.6
SMO111G0152 Selaginella moellendorffii HOM05D002959 ORTHO05D003237 3.3e-07 59.3 82 35.4
Ah.09g236560 Amaranthus hybridus HOM05D002959 ORTHO05D003237 5.7e-07 58.5 101 36.6
CSS0023857 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 7.4e-07 58.2 167 29.3
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 7.4e-07 58.2 101 35.6
COL.COLO4_27693 Corchorus olitorius HOM05D002959 ORTHO05D003237 9.7e-07 57.8 157 28.7
Nitab4.5_0009026g0020 Nicotiana tabacum HOM05D002959 ORTHO05D003237 2.2e-06 56.6 140 30.0
PSO478G4511 Papaver somniferum HOM05D002959 ORTHO05D003237 2.8e-06 56.2 148 30.4
Dinv05451 Davidia involucrata HOM05D002959 ORTHO05D003237 6.3e-06 55.1 146 28.1


User provided reference genes

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