Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.7e-22 108.2 73 100.0
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.0e-13 77.4 54 79.6
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.9e-12 75.5 56 73.2
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 4.3e-12 74.3 56 75.0
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.2e-11 72.8 54 74.1
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.1e-11 72.0 48 83.3
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 3.6e-11 71.2 56 71.4
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 3.6e-11 71.2 54 72.2
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 8.0e-11 70.1 56 71.4
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 8.0e-11 70.1 58 70.7
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.0e-10 69.7 54 75.9
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 1.8e-10 68.9 51 74.5
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.8e-10 68.9 54 72.2
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 2.3e-10 68.6 56 71.4
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.3e-10 68.6 59 72.9
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 3.1e-10 68.2 56 67.9
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 4.0e-10 67.8 58 67.2
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 4.0e-10 67.8 54 72.2
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 5.2e-10 67.4 57 70.2
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 6.8e-10 67.0 48 77.1
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 8.9e-10 66.6 54 72.2
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 8.9e-10 66.6 58 67.2
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.2e-09 66.2 52 75.0
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 1.2e-09 66.2 57 68.4
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 1.2e-09 66.2 57 68.4
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.5e-09 65.9 51 70.6
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.5e-09 65.9 55 69.1
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.0e-09 65.5 53 73.6
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 2.6e-09 65.1 53 69.8
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 3.4e-09 64.7 52 71.2
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 3.4e-09 64.7 52 71.2
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 3.4e-09 64.7 53 71.7
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 3.4e-09 64.7 57 71.9
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 3.4e-09 64.7 55 69.1
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 3.4e-09 64.7 52 71.2
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.4e-09 64.7 55 69.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 4.4e-09 64.3 52 73.1
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.8e-09 63.9 49 77.6
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 5.8e-09 63.9 58 63.8
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 7.5e-09 63.5 56 67.9
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 7.5e-09 63.5 56 67.9
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 9.8e-09 63.2 48 77.1
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 9.8e-09 63.2 48 77.1
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 9.8e-09 63.2 53 71.7
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 9.8e-09 63.2 50 78.0
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.3e-08 62.8 50 76.0
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.7e-08 62.4 56 66.1
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 2.9e-08 61.6 57 64.9
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 2.9e-08 61.6 49 75.5
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 2.9e-08 61.6 57 64.9
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.9e-08 61.6 56 66.1
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.7e-08 61.2 47 78.7
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.7e-08 61.2 54 70.4
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 4.9e-08 60.8 48 77.1
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 4.9e-08 60.8 57 66.7
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 4.9e-08 60.8 48 75.0
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.9e-08 60.8 47 78.7
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 6.4e-08 60.5 48 75.0
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 6.4e-08 60.5 47 76.6
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 8.3e-08 60.1 48 75.0
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 8.3e-08 60.1 51 70.6
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.1e-07 59.7 47 76.6
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 1.1e-07 59.7 48 75.0
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.1e-07 59.7 50 70.0
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.4e-07 59.3 55 65.5
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.4e-07 59.3 47 76.6
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.9e-07 58.9 54 66.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.9e-07 58.9 47 76.6
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.9e-07 58.9 47 76.6
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.9e-07 58.9 47 76.6
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.4e-07 58.5 48 72.9
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 2.4e-07 58.5 54 66.7
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.4e-07 58.5 56 64.3
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.4e-07 58.5 48 75.0
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 3.2e-07 58.2 48 72.9
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 3.2e-07 58.2 50 70.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.1e-07 57.8 46 76.1
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.1e-07 57.8 50 68.0
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.4e-07 57.4 49 69.4
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.4e-07 57.4 49 69.4
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 9.2e-07 56.6 46 73.9
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 9.2e-07 56.6 51 66.7
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 1.2e-06 56.2 56 62.5
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.6e-06 55.8 45 75.6
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.6e-06 55.8 56 62.5
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 1.6e-06 55.8 52 65.4
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 1.6e-06 55.8 42 73.8
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 2.7e-06 55.1 44 77.3
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 2.7e-06 55.1 54 66.7
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 2.7e-06 55.1 54 63.0
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.6e-06 54.3 44 75.0
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 6.0e-06 53.9 53 62.3
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 6.0e-06 53.9 49 69.4
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 7.8e-06 53.5 44 75.0


User provided reference genes

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