Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.3e-292 1006.9 491 100.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.3e-274 949.1 491 93.9
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.1e-249 866.3 486 87.7
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.9e-249 865.5 481 88.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.9e-249 865.5 490 88.0
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 4.3e-249 864.4 486 87.4
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 4.3e-249 864.4 488 88.5
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 7.3e-249 863.6 457 91.9
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 7.3e-249 863.6 430 94.4
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 7.3e-249 863.6 484 88.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 7.3e-249 863.6 482 88.0
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 7.3e-249 863.6 483 87.8
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 7.3e-249 863.6 482 87.3
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 7.3e-249 863.6 482 87.6
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 9.5e-249 863.2 430 94.2
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.2e-248 862.8 488 88.1
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.6e-248 862.4 481 88.1
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.6e-248 862.4 490 87.8
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.6e-248 862.4 456 92.1
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.1e-248 862.1 488 88.1
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.1e-248 862.1 482 88.0
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 2.8e-248 861.7 479 88.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.8e-248 861.7 430 93.7
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 2.8e-248 861.7 430 93.7
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.6e-248 861.3 488 87.9
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.6e-248 861.3 458 90.8
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.6e-248 861.3 490 87.6
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 4.7e-248 860.9 487 87.9
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 6.2e-248 860.5 490 87.3
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 6.2e-248 860.5 490 87.6
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 6.2e-248 860.5 475 88.2
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 8.0e-248 860.1 430 94.0
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 1.1e-247 859.8 456 91.2
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.1e-247 859.8 486 85.6
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.1e-247 859.8 484 87.4
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 1.4e-247 859.4 437 92.2
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.4e-247 859.4 466 89.5
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.8e-247 859.0 481 87.1
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 2.3e-247 858.6 481 86.5
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.3e-247 858.6 486 86.6
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.3e-247 858.6 437 93.1
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.1e-247 858.2 485 87.2
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 3.1e-247 858.2 481 86.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 3.1e-247 858.2 481 88.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.1e-247 858.2 430 93.7
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 5.2e-247 857.4 475 88.2
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.2e-247 857.4 469 87.6
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 5.2e-247 857.4 481 87.7
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 8.9e-247 856.7 484 87.0
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.9e-247 856.7 469 88.5
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.9e-247 856.7 430 93.3
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 1.2e-246 856.3 486 86.6
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.2e-246 856.3 455 90.3
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.2e-246 856.3 482 87.1
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.2e-246 856.3 475 87.2
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.2e-246 856.3 466 88.2
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.5e-246 855.9 475 87.6
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.5e-246 855.9 475 87.6
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.5e-246 855.9 489 85.7
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.5e-246 855.9 489 85.7
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.0e-246 855.5 482 86.9
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.0e-246 855.5 475 88.2
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.0e-246 855.5 483 86.5
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.0e-246 855.5 482 87.8
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.6e-246 855.1 476 87.4
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 2.6e-246 855.1 455 91.9
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.6e-246 855.1 482 85.7
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.6e-246 855.1 486 86.6
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 2.6e-246 855.1 482 86.3
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.4e-246 854.7 430 93.3
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 3.4e-246 854.7 475 87.2
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 3.4e-246 854.7 467 88.4
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 3.4e-246 854.7 437 91.8
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.4e-246 854.7 437 92.0
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.4e-246 854.7 482 86.3
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.4e-246 854.7 483 86.3
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.4e-246 854.7 430 92.8
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 4.4e-246 854.4 482 86.7
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 4.4e-246 854.4 470 87.9
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 4.4e-246 854.4 430 92.8
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 4.4e-246 854.4 430 93.0
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 4.4e-246 854.4 429 93.0
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 4.4e-246 854.4 489 85.5
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.8e-246 854.0 466 88.6
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 5.8e-246 854.0 482 86.9
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 5.8e-246 854.0 455 90.5
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 5.8e-246 854.0 482 86.1
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 7.5e-246 853.6 430 94.0
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 9.8e-246 853.2 482 86.1
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 9.8e-246 853.2 481 86.5
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 9.8e-246 853.2 430 92.8
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.3e-245 852.8 455 90.8
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.3e-245 852.8 455 90.3
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.7e-245 852.4 432 91.9
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.7e-245 852.4 477 86.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.7e-245 852.4 484 86.4
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 2.2e-245 852.0 437 91.3
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 3.7e-245 851.3 493 85.2
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 4.9e-245 850.9 466 88.8
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.1e-244 849.7 480 86.7
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.4e-244 849.4 477 86.2
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.4e-244 849.4 482 86.1
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.9e-244 849.0 443 91.6
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 2.4e-244 848.6 467 88.2
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.4e-244 848.6 430 92.6
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.4e-244 848.6 437 91.3
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 3.2e-244 848.2 430 92.3
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 4.1e-244 847.8 455 90.3
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 7.0e-244 847.0 480 86.2
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.1e-243 845.5 464 88.1
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 2.1e-243 845.5 484 86.2
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.9e-242 841.3 461 85.7
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.5e-241 838.6 476 87.0
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 4.4e-238 827.8 435 88.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 9.9e-238 826.6 461 87.4
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 8.6e-234 813.5 430 86.7
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.1e-231 805.1 402 94.0
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 6.8e-231 803.9 400 94.2
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.3e-229 799.7 400 93.8
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.2e-228 795.0 400 93.0
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.0e-226 790.0 407 90.7
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 9.6e-225 783.5 425 85.4
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.6e-219 766.1 419 83.8
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.1e-216 755.7 481 76.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 6.2e-216 754.2 424 80.7
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.9e-215 750.7 385 92.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 4.6e-211 738.0 483 77.6
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.0e-202 708.8 399 86.2
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.9e-195 684.1 343 93.9
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.6e-192 676.4 430 77.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 8.8e-186 654.1 401 74.3
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.0e-185 652.9 346 89.9
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 9.1e-183 644.0 364 86.3
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.0e-169 599.7 309 91.3
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-161 573.9 484 64.7
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 7.0e-159 564.7 308 89.0
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.3e-154 549.7 484 63.0
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.3e-154 549.7 484 63.0
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.8e-153 544.3 430 65.3
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.4e-145 519.2 279 87.8
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.0e-138 495.7 351 71.8
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 4.3e-124 449.1 274 74.8
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.1e-111 407.9 202 95.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.3e-96 357.8 176 92.6
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.2e-96 357.1 191 88.0
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.8e-88 329.7 166 93.4
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.8e-85 320.9 164 91.5
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 9.0e-74 282.0 146 91.1
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.3e-68 263.5 475 38.1
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.0e-65 254.2 146 83.6
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.4e-63 248.1 127 88.2
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.6e-60 237.3 138 87.7
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 3.7e-59 233.4 128 86.7
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.1e-54 216.1 259 43.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.4e-50 204.9 99 94.9
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.5e-49 200.3 97 92.8
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.5e-47 194.1 102 89.2
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.0e-38 162.5 129 70.5
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.2e-33 148.7 102 73.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 4.0e-29 133.7 70 88.6
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 4.0e-29 133.7 70 88.6
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 3.4e-28 130.6 197 37.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.1e-26 123.6 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.1e-26 123.6 65 89.2
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.6e-25 121.7 62 93.5
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.9e-25 119.8 110 59.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-24 118.2 63 87.3
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.9e-23 114.8 63 84.1
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.6e-22 110.5 59 86.4
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.6e-22 110.5 65 80.0
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.0e-22 109.4 59 84.7
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 7.5e-20 102.8 67 65.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.7e-19 101.7 47 95.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.3e-13 81.3 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 6.8e-13 79.7 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 56.9
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 2.6e-12 77.8 68 52.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.2e-10 69.3 61 59.0


User provided reference genes

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