Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_3890 Physcomitrium patens HOM05D036681 ORTHO05D050311 6.8e-50 200.3 97 100.0
Pp3c6_6220 Physcomitrium patens HOM05D000018 ORTHO05D010444 6.6e-37 157.1 86 86.0
Pp3c16_9590 Physcomitrium patens HOM05D000018 ORTHO05D010444 1.4e-31 139.4 87 72.4
Pp3c25_8200 Physcomitrium patens HOM05D000018 ORTHO05D010444 1.5e-28 129.4 87 64.4
Pp3c15_2341 Physcomitrium patens HOM05D036681 ORTHO05D050311 1.0e-16 90.1 58 77.6
PGR031G0572 Punica granatum HOM05D000858 ORTHO05D002556 8.2e-11 70.5 80 47.5
Aqoxy5G02716 Aquilegia oxysepala HOM05D000858 ORTHO05D002556 4.1e-10 68.2 80 46.2
DCAR_002522 Daucus carota HOM05D000858 ORTHO05D002556 1.2e-09 66.6 80 45.0
Duzib151G0830 Durio zibethinus HOM05D000858 ORTHO05D002556 1.2e-09 66.6 81 43.2
Lalb_Chr07g0181891 Lupinus albus HOM05D000858 ORTHO05D002556 1.5e-09 66.2 78 44.9
Gohir.A01G035900 Gossypium hirsutum HOM05D000858 ORTHO05D002556 2.0e-09 65.9 78 46.2
SMO172G0177 Selaginella moellendorffii HOM05D000018 ORTHO05D010444 2.6e-09 65.5 62 51.6
CAN.G305.54 Capsicum annuum HOM05D000858 ORTHO05D002556 3.4e-09 65.1 78 47.4
Dinv44251 Davidia involucrata HOM05D000858 ORTHO05D002556 5.9e-09 64.3 72 45.8
Duzib212G0097 Durio zibethinus HOM05D000858 ORTHO05D002556 5.9e-09 64.3 72 45.8
Gorai.006G266000 Gossypium raimondii HOM05D000858 ORTHO05D002556 5.9e-09 64.3 81 45.7
GSVIVG01004790001 Vitis vinifera HOM05D000018 ORTHO05D010444 5.9e-09 64.3 87 41.4
COL.COLO4_34563 Corchorus olitorius HOM05D000858 ORTHO05D002556 7.6e-09 63.9 86 39.5
ECA233G5662 Erigeron canadensis HOM05D000858 ORTHO05D002556 7.6e-09 63.9 76 47.4
Lalb_Chr13g0298721 Lupinus albus HOM05D000858 ORTHO05D002556 7.6e-09 63.9 78 44.9
Nitab4.5_0006837g0020 Nicotiana tabacum HOM05D000018 ORTHO05D010444 7.6e-09 63.9 81 43.2
SMO172G0001 Selaginella moellendorffii HOM05D000018 ORTHO05D001172 7.6e-09 63.9 64 45.3
Gohir.D01G023583 Gossypium hirsutum HOM05D000858 ORTHO05D002556 1.0e-08 63.5 72 45.8
Gohir.D09G242300 Gossypium hirsutum HOM05D000858 ORTHO05D002556 1.0e-08 63.5 81 45.7
Lalb_Chr06g0167031 Lupinus albus HOM05D000858 ORTHO05D002556 1.0e-08 63.5 80 42.5
Potri.008G101600 Populus trichocarpa HOM05D000858 ORTHO05D002556 1.0e-08 63.5 72 44.4
PGSC0003DMG400027206 Solanum tuberosum HOM05D000858 ORTHO05D002556 1.0e-08 63.5 74 48.6
Thecc.04G306900 Theobroma cacao HOM05D000858 ORTHO05D002556 1.0e-08 63.5 72 44.4
Gohir.A09G241600 Gossypium hirsutum HOM05D000858 ORTHO05D002556 1.3e-08 63.2 81 45.7
RcHm_v2.0_Chr4g0426161 Rosa chinensis HOM05D000858 ORTHO05D002556 1.3e-08 63.2 71 43.7
Dinv15131 Davidia involucrata HOM05D000858 ORTHO05D002556 1.7e-08 62.8 72 45.8
Lsat_1_v5_gn_6_70461 Lactuca sativa HOM05D000858 ORTHO05D002556 1.7e-08 62.8 74 45.9
MBI19_g03287_MAGBIO Magnolia biondii HOM05D000858 ORTHO05D002556 1.7e-08 62.8 86 41.9
Solyc05g053340.4 Solanum lycopersicum HOM05D000858 ORTHO05D002556 1.7e-08 62.8 74 48.6
Gorai.002G031700 Gossypium raimondii HOM05D000858 ORTHO05D002556 2.2e-08 62.4 72 45.8
Peaxi162Scf00164g00091 Petunia axillaris HOM05D000858 ORTHO05D002556 2.9e-08 62.0 72 47.2
Prupe.1G111900 Prunus persica HOM05D000858 ORTHO05D002556 2.9e-08 62.0 74 48.6
SalBow3G3862 Salvia bowleyana HOM05D000858 ORTHO05D002556 2.9e-08 62.0 81 39.5
Sopen05g031850 Solanum pennellii HOM05D000858 ORTHO05D002556 2.9e-08 62.0 74 48.6
GSVIVG01034945001 Vitis vinifera HOM05D000858 ORTHO05D002556 2.9e-08 62.0 80 41.2
CANSAT78G2234 Cannabis sativa HOM05D000858 ORTHO05D002556 3.8e-08 61.6 84 41.7
Peaxi162Scf00228g00912 Petunia axillaris HOM05D000858 ORTHO05D002556 3.8e-08 61.6 72 44.4
Pp3c8_3050 Physcomitrium patens HOM05D000018 ORTHO05D000682 3.8e-08 61.6 66 42.4
Potri.010G149700 Populus trichocarpa HOM05D000858 ORTHO05D002556 5.0e-08 61.2 72 44.4
Sabra10G0115400 Salix brachista HOM05D000858 ORTHO05D002556 5.0e-08 61.2 72 43.1
Ciclev10005385m.g Citrus clementina HOM05D000858 ORTHO05D002556 6.5e-08 60.8 74 40.5
Nitab4.5_0001814g0040 Nicotiana tabacum HOM05D000858 ORTHO05D002556 6.5e-08 60.8 72 47.2
CANSAT25G0881 Cannabis sativa HOM05D000858 ORTHO05D002556 8.5e-08 60.5 80 40.0
Nitab4.5_0000662g0210 Nicotiana tabacum HOM05D000018 ORTHO05D010444 8.5e-08 60.5 81 42.0
CiPaw.07G120700 Carya illinoinensis HOM05D000858 ORTHO05D002556 1.1e-07 60.1 80 41.2
MD13G1148400 Malus domestica HOM05D000858 ORTHO05D002556 1.1e-07 60.1 74 43.2
Peaxi162Scf00000g00426 Petunia axillaris HOM05D000018 ORTHO05D010444 1.1e-07 60.1 81 42.0
Pp3c5_4920 Physcomitrium patens HOM05D000018 ORTHO05D000682 1.1e-07 60.1 75 38.7
Actinidia02510 Actinidia chinensis HOM05D000858 ORTHO05D002556 1.4e-07 59.7 82 41.5
BcaB02g11356 Brassica carinata HOM05D000858 ORTHO05D002556 2.5e-07 58.9 74 40.5
FAN12G3342 Fragaria x ananassa HOM05D000858 ORTHO05D002556 2.5e-07 58.9 72 43.1
Pp3c3_32410 Physcomitrium patens HOM05D000018 ORTHO05D000682 2.5e-07 58.9 66 40.9
Pp3c4_2230 Physcomitrium patens HOM05D000018 ORTHO05D000682 2.5e-07 58.9 75 38.7
TWI73G0192 Tripterygium wilfordii HOM05D000858 ORTHO05D002556 2.5e-07 58.9 72 41.7
Migut.D00053 Erythranthe guttata HOM05D000858 ORTHO05D002556 3.2e-07 58.5 81 40.7
Nn4g25461 Nelumbo nucifera HOM05D000858 ORTHO05D002556 3.2e-07 58.5 72 43.1
VMungo0720G0536 Vigna mungo HOM05D000858 ORTHO05D002556 3.2e-07 58.5 80 38.8
CSS0021896 Camellia sinensis var. sinensis HOM05D000858 ORTHO05D002556 4.2e-07 58.2 80 40.0
CiPaw.01G133800 Carya illinoinensis HOM05D000858 ORTHO05D002556 4.2e-07 58.2 73 42.5
Ca_10264_v3 Cicer arietinum L. HOM05D000858 ORTHO05D002556 4.2e-07 58.2 80 38.8
Lj5g0005772 Lotus japonicus HOM05D000858 ORTHO05D002556 4.2e-07 58.2 80 40.0
Mapoly0031s0098 Marchantia polymorpha HOM05D000018 ORTHO05D001172 4.2e-07 58.2 77 32.5
Pp3c6_22580 Physcomitrium patens HOM05D000018 ORTHO05D001513 4.2e-07 58.2 75 37.3
Solyc01g058030.2 Solanum lycopersicum HOM05D000858 ORTHO05D002556 4.2e-07 58.2 72 45.8
PGSC0003DMG400013089 Solanum tuberosum HOM05D000858 ORTHO05D002556 4.2e-07 58.2 72 45.8
CiPaw.02G072300 Carya illinoinensis HOM05D000858 ORTHO05D002556 5.5e-07 57.8 72 43.1
Lj6A695G24 Lonicera japonica HOM05D000858 ORTHO05D002556 5.5e-07 57.8 71 47.9
FAN07G2004 Fragaria x ananassa HOM05D000858 ORTHO05D002556 7.2e-07 57.4 72 41.7
Lalb_Chr02g0146941 Lupinus albus HOM05D000858 ORTHO05D002556 7.2e-07 57.4 80 38.8
Pp3c16_12680 Physcomitrium patens HOM05D000018 ORTHO05D001513 7.2e-07 57.4 75 37.3
Aqoxy2G02634 Aquilegia oxysepala HOM05D000858 ORTHO05D002556 9.3e-07 57.0 72 41.7
Phvul.007G212200 Phaseolus vulgaris HOM05D000858 ORTHO05D002556 9.3e-07 57.0 80 38.8
Sopen01g023520 Solanum pennellii HOM05D000858 ORTHO05D002556 9.3e-07 57.0 77 42.9
TWI14G1336 Tripterygium wilfordii HOM05D000858 ORTHO05D002556 9.3e-07 57.0 80 35.0
Actinidia14246 Actinidia chinensis HOM05D000858 ORTHO05D002556 1.2e-06 56.6 72 43.1
MSTRG.21712 Avicennia marina HOM05D000858 ORTHO05D002556 1.2e-06 56.6 80 40.0
Ciclev10024433m.g Citrus clementina HOM05D000858 ORTHO05D002556 1.2e-06 56.6 80 40.0
TAR362G0803 Trochodendron aralioides HOM05D000858 ORTHO05D002556 1.2e-06 56.6 72 43.1
arahy.Tifrunner.gnm1.ann1.1SCL5Q Arachis hypogaea HOM05D000858 ORTHO05D002556 1.6e-06 56.2 80 37.5
Eucgr.K03561 Eucalyptus grandis HOM05D000858 ORTHO05D002556 1.6e-06 56.2 81 38.3
arahy.Tifrunner.gnm1.ann1.FH4MAJ Arachis hypogaea HOM05D000858 ORTHO05D002556 2.1e-06 55.8 80 37.5
CSS0048861 Camellia sinensis var. sinensis HOM05D000206 ORTHO05D000232 2.1e-06 55.8 62 45.2
Eucgr.B03983 Eucalyptus grandis HOM05D000858 ORTHO05D002556 2.1e-06 55.8 80 38.8
HanXRQChr08g0235491 Helianthus annuus HOM05D000858 ORTHO05D002556 2.1e-06 55.8 74 44.6
Cfa012677 Carpinus fangiana HOM05D000018 ORTHO05D010444 2.7e-06 55.5 66 42.4
Cc00_g21190 Coffea canephora HOM05D000858 ORTHO05D014075 2.7e-06 55.5 70 45.7
Manes.03G208300 Manihot esculenta HOM05D000858 ORTHO05D002556 2.7e-06 55.5 72 40.3
Nn3g21813 Nelumbo nucifera HOM05D000858 ORTHO05D002556 2.7e-06 55.5 72 38.9
Solyc12g013780.3 Solanum lycopersicum HOM05D000018 ORTHO05D010444 2.7e-06 55.5 81 37.0
Actinidia31504 Actinidia chinensis HOM05D000018 ORTHO05D010444 3.6e-06 55.1 66 39.4
Cpa.g.sc18.101 Carica papaya HOM05D000858 ORTHO05D002556 3.6e-06 55.1 72 40.3
HanXRQChr10g0284751 Helianthus annuus HOM05D000858 ORTHO05D002556 3.6e-06 55.1 78 42.3
Nitab4.5_0000992g0010 Nicotiana tabacum HOM05D000858 ORTHO05D002556 3.6e-06 55.1 72 40.3
TAR375G0556 Trochodendron aralioides HOM05D000018 ORTHO05D010444 3.6e-06 55.1 85 37.6
TAR636G1873 Trochodendron aralioides HOM05D000858 ORTHO05D002556 3.6e-06 55.1 69 43.5
VMungo1383G1893 Vigna mungo HOM05D000858 ORTHO05D002556 3.6e-06 55.1 72 38.9
C04p14480 Brassica napus HOM05D000858 ORTHO05D001578 4.6e-06 54.7 72 37.5
BolC4t23031H Brassica oleracea HOM05D000858 ORTHO05D001578 4.6e-06 54.7 72 37.5
Migut.A01030 Erythranthe guttata HOM05D000018 ORTHO05D010444 4.6e-06 54.7 89 34.8
Migut.G00026 Erythranthe guttata HOM05D000858 ORTHO05D002556 4.6e-06 54.7 74 44.6
SEGI_16208 Sequoiadendron giganteum HOM05D000206 ORTHO05D000232 4.6e-06 54.7 78 35.9
SEGI_33398 Sequoiadendron giganteum HOM05D000206 ORTHO05D000232 4.6e-06 54.7 78 35.9
PGSC0003DMG400026258 Solanum tuberosum HOM05D000366 ORTHO05D000437 4.6e-06 54.7 71 40.8
EL10As5g23601 Beta vulgaris HOM05D000858 ORTHO05D002556 6.1e-06 54.3 65 47.7
Cc01_g21980 Coffea canephora HOM05D000858 ORTHO05D002556 6.1e-06 54.3 80 36.2
Haze_05086 Corylus avellana HOM05D000858 ORTHO05D002556 6.1e-06 54.3 81 40.7
DCAR_018261 Daucus carota HOM05D000858 ORTHO05D002556 6.1e-06 54.3 73 38.4
FvH4_5g19970 Fragaria vesca HOM05D000018 ORTHO05D010444 6.1e-06 54.3 66 42.4
FAN18G2860 Fragaria x ananassa HOM05D000018 ORTHO05D010444 6.1e-06 54.3 66 42.4
Gorai.008G137500 Gossypium raimondii HOM05D000858 ORTHO05D002556 6.1e-06 54.3 74 40.5
Oeu038050.1 Olea europaea HOM05D000858 ORTHO05D002556 6.1e-06 54.3 83 37.3
Peaxi162Scf00770g00028 Petunia axillaris HOM05D000858 ORTHO05D002556 6.1e-06 54.3 71 40.8
Sc16g0003360 Simmondsia chinensis HOM05D000858 ORTHO05D001578 6.1e-06 54.3 78 34.6
PGSC0003DMG400039990 Solanum tuberosum HOM05D000863 ORTHO05D010444 6.1e-06 54.3 81 38.3
vmacro07972 Vaccinium macrocarpon HOM05D000858 ORTHO05D002556 6.1e-06 54.3 72 41.7
arahy.Tifrunner.gnm1.ann1.X1BTJA Arachis hypogaea HOM05D000858 ORTHO05D002556 7.9e-06 53.9 73 38.4
MSTRG.21756 Avicennia marina HOM05D000858 ORTHO05D002556 7.9e-06 53.9 80 42.5
CANSAT64G1403 Cannabis sativa HOM05D000206 ORTHO05D002004 7.9e-06 53.9 64 39.1
AUR62011753 Chenopodium quinoa HOM05D000858 ORTHO05D002556 7.9e-06 53.9 65 47.7
FAN08G1476 Fragaria x ananassa HOM05D000018 ORTHO05D010444 7.9e-06 53.9 66 42.4
Glyma.02G010100 Glycine max HOM05D000858 ORTHO05D002556 7.9e-06 53.9 72 38.9
SalBow6G5743 Salvia bowleyana HOM05D000018 ORTHO05D010444 7.9e-06 53.9 68 36.8


User provided reference genes

Program Settings